Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04141 ATGGCATTTTTCTCTGGATTTCAACGCTTAATTCGTCACTCTCAATCCCCACTTGTTAGCTCTCACTTCACTTCGATACGTCTCAATTCAACTCTCACTTCCCCCAAACTTTTTGTCAGCGGCCTTTCGAGACAGACAACGGATGAAAAACTTACGGAAGCATTTTCTCCTTTTGGGCAGCTGGTCGAAGCTAAGGTGATAATGGATAGAGCCTCTGGAAGATCAAAGGGATTTGCTTTTGTATCGTATGCAACCGTAGAAGAAGCTGAGAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCGAAACCAAGAGAGCCCAGACCTCCTCAGCAATCAGAATCTCAGCCGTCTCAAGCCGGTTTCACAGTTAATAAGACCGTTGGATGGTGTGGTTGA 426 0.4437 MAFFSGFQRLIRHSQSPLVSSHFTSIRLNSTLTSPKLFVSGLSRQTTDEKLTEAFSPFGQLVEAKVIMDRASGRSKGFAFVSYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSESQPSQAGFTVNKTVGWCG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04141 141 Gene3D - 26 135 IPR012677 -
Trre13g04141 141 PANTHER NUCLEOLAR PROTEIN 8 21 140 - -
Trre13g04141 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Trre13g04141 141 FunFam RNA binding protein 22 135 - -
Trre13g04141 141 MobiDBLite consensus disorder prediction 111 130 - -
Trre13g04141 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Trre13g04141 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Trre13g04141 141 SUPERFAMILY RNA-binding domain, RBD 34 133 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04141 Trre-Chr13 49271378 49273483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04141 37 128 Eukaryotic Initiation Factors Gene Family AT3G16380 38.947 6.45e-14 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04141 13 49271378 49273483 Trre13g04141 13 49271378 49273483 ECH