Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04140 ATGACGTCATTTTTGAAGCCTGAGAATGCACTTAAAAGGGCAGAAGAGTTAATCAATGTCGGGCAGAAGCAGGATGCTCTTCAGACCCTGCATGATCTTATTACTTCGAAAAGATACAGAGCATGGCAGAAAACACTTGAAAGGATCATGTTTAAGTATGTAGAGCTGTGTGTAGACATGAGGAAAGGACGGTTTGCTAAGGACGGGCTCATTCAATATCGAATCATTTGTCAGCAAGTTAATGTTAGTTCACTGGAGGAGGTGATTAAGCATTTCATGCACCTGTCAACAGAGAAAGCTGAACAAGCTCGTAGCCAGGCTCAGGAATTAGAAGAAGCCCTTGATGTTGATGACTTAGAGGCAGATAAAAGGCCAGAGGACTTGATGCTGAGCTATGTCAGTGGTGAGAAAGGAAAGGATAGATCTGATCGGGAGCTTGTTACCCCATGGTTTAAATTTCTATGGGAAACTTACAGAACAGTGCTCGAAATATTGCGGAACAACTCAAAATTGGAAGCCCTATATGCTATGACAGCCCATCGAGCTTTCCAGTTTTGTAAGCAGTATAAACGAACGACAGAGTTTCGAAGACTTTGCGAAATCATTAGAAATCATTTGGCTAATCTTAACAAATATCGGGACCAACGAGACCGACCTGATCTTTCTGCTCCTGAAAGCTTGCAATTGTACCTTGATACAAGATTCGAGCAGCTGAAAATTGCCACTGAGCTTGAACTCTGGCAGGAAGCCTTTAGATCTGTTGAAGATATACATGGGTTGATGTGCATGGTCAAGAAAACTCCAAAACCATCCCTTATGACGGTTTACTATGTTAAGTTGACTGAAATATTTTGGATATCTTCAAGTCATTTATATCATGCATATGCATGGTTCAAGCTCTTTTTGTTACAAAAAAGTTTCAACAAAAATCTGAGTCAGAAGGATCTCCAGTTAATAGCTTCATCTGTTGTTTTAGCTGCACTTTCAGTACCTCCTCATGATCGCACTCACGGTGCATCCCATTTAGAACTGGAGCATGAAAAGGAGCGAAATTTGAGGATGGCTAATCTTATTGGCTTTAATCTTGAAACTAAGCCTGATAGCAGAGAAATGCTCTCAAGGTCATCACTTCTCGCTGAACTGGCATCGAAGGGTGTGATGTCTTGTGTTTCACAAGAAGTGAAAGACATTTACTATCTTTTGGAACATGAATTTCTACCCTCGGATCTTGCACTAAAAGTACTACCCCTGCTAAATAAGATTTCAAAATTAGGGGGTAAGTTTACCTTTGCTTCATCGGTTCCAGAGGTGCAATTTTCGCAGTATGTCCCAGCACTTGAAAAGTTAGCTACCTTGAGGTTACTACAACAGGTGTCTAATGTGTACCAAACAATGAAGATTGATAACCTTGCTGGGTTGATCCCTTTCTTTGATTTTTCCGTTGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAATTTCTATCAATGAAAGTCGATCACATGAAAAATGTTGTTATTTTCTGTAAGACGAGTCTTGAGGCTGATGGCTTGAAGGATCACCTGGCTAGTTTTGCTGAACAATTGAATAAGGCAAGGCAAATGATTTGTCCTCCTGATAGGAAACAATCAAAACTTGGAGCCTTGCTCCCGGCCTTGTCTGAGGTAGTGGCCAAAGAACACAAGAGGCTCCTTGCTCGGAAAACTATTATTGAAAAGAGGAAAGAGGATCAAGAACGACAGCTTCTTGAAATGGAACGCGAGGAGGAGACCAAGAAGATAAGACTGCAGAAAGTTAATGATGAAGCTGAGCAAAGGCGACTTGCAGCTGAGTTGGAGGCTAGGCGAAATAAAAGGATCCAAAGGGAAATGGAGGAAAAGGATAGAGAAGAAGCTCAGCTTATGCTTGAAGAAGCTAAAAGGCTTCTTTCAGGAAAGGGTAAAAAGCCCCCGATCATAGAGACAGGCAACCTTTCTAGGCAGGCCTTGTTACAGTTGAATTTGATGCAACAACAACGGGCGAGACAAGATATGGATAAGAAACTGCAGAAATTAGCCAAGACCATGGATCATTTGGAAAGAGCAAAGAGAGAAGAGGCTGCTCCGCTTATTGAAGCGGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCACGAGCGTGAGCAACAATTGGAGGTTGAACTGAGCAAACAGCGCCATGCTGGCGATCTCAATGAAAAGGAGAGGCTTAGTCGAATGATGGGAAATAAAGAGGTATATCAAGAGAGAGTTGTCAGTCATCGGCAAGCAGAAATTAATAGACTTAATAGAGAGAGAGAGGAGCGCATCTCTAGGATTTTACAATCCAGAAAACAGGAGAGGGAAAAGTTGAGGAAGTTGAAGTATTTTCTTCAGGTTGAAGAAGAGAGACGACAAAAATTGCGTGAGGCAGAAGAAGCTCAGAAGCGCGAAGAGGCAGAGAGAAAAAAGAAGGAACAGCTTGAACGCCAAGCAAAATTGGATGAGATACTTGAAAAGCAGAGGCAAAGGGAAAGAGAAATTGAAGAAAAGGCAGAGAGGGAAAAGAGAGAAGCATTGTTGGGCAGACCTGCTGAACCTGCTCTGAGGCCTTATGAGCCTCCTGCCCGTCCATTGGAGTCTGGTGCTGCTCCCGCTGCTGCAGCTGCTGCAGCCTCAGCTCCAGGGAAATATGTTCCGAAGTTCCGGCGAGGAGGTGCTGATACCGCAAGAGCTCCTCCTCCAGAAGCAGATCGTTGGGGCAACAGTAGCAGCAAGCCAGATGCTGACAGGTGGGACCGTAACACCTCATTTGGTGGCGGTTCGAGGTCATCTTCAACTTGGTCATCTTCCAGGGTTTCCCGTGATCGTCAGTGA 2877 0.4359 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQELEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWISSSHLYHAYAWFKLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKPDSREMLSRSSLLAELASKGVMSCVSQEVKDIYYLLEHEFLPSDLALKVLPLLNKISKLGGKFTFASSVPEVQFSQYVPALEKLATLRLLQQVSNVYQTMKIDNLAGLIPFFDFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLKDHLASFAEQLNKARQMICPPDRKQSKLGALLPALSEVVAKEHKRLLARKTIIEKRKEDQERQLLEMEREEETKKIRLQKVNDEAEQRRLAAELEARRNKRIQREMEEKDREEAQLMLEEAKRLLSGKGKKPPIIETGNLSRQALLQLNLMQQQRARQDMDKKLQKLAKTMDHLERAKREEAAPLIEAAYQQRLVEERILHEREQQLEVELSKQRHAGDLNEKERLSRMMGNKEVYQERVVSHRQAEINRLNREREERISRILQSRKQEREKLRKLKYFLQVEEERRQKLREAEEAQKREEAERKKKEQLERQAKLDEILEKQRQREREIEEKAEREKREALLGRPAEPALRPYEPPARPLESGAAPAAAAAAASAPGKYVPKFRRGGADTARAPPPEADRWGNSSSKPDADRWDRNTSFGGGSRSSSTWSSSRVSRDRQ 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04140 958 Gene3D UVR domain 217 268 - -
Trre13g04140 958 MobiDBLite consensus disorder prediction 809 958 - -
Trre13g04140 958 Coils Coil 668 698 - -
Trre13g04140 958 Pfam PCI domain 373 508 IPR000717 -
Trre13g04140 958 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Trre13g04140 958 Coils Coil 561 642 - -
Trre13g04140 958 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Trre13g04140 958 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Trre13g04140 958 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Trre13g04140 958 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 944 IPR027512 GO:0005852
Trre13g04140 958 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Trre13g04140 958 Gene3D - 269 342 - -
Trre13g04140 958 Gene3D - 352 510 - -
Trre13g04140 958 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 934 IPR027512 GO:0005852
Trre13g04140 958 Coils Coil 797 858 - -
Trre13g04140 958 Coils Coil 93 120 - -
Trre13g04140 958 MobiDBLite consensus disorder prediction 937 952 - -
Trre13g04140 958 MobiDBLite consensus disorder prediction 809 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04140 Trre-Chr13 49261815 49267423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04140 1 952 Eukaryotic Initiation Factors Gene Family AT4G11420 68.973 0.0 1271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04140 K03254 - gmx:100803796 1412.13