Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04132 ATGGCGGCGGCGCGGCGGCTCCGTGAGCTTCAATCAGAACAATCAAACAAGATCTGCGTCGATTGTTCCCAAAAGAATCCACAATGGGCTTCCGTTTCCTACGGAATTTTCATGTGTCTAGAATGTTCCGGCAAACACCGTGGCCTCGGCGTTCACATTTCCTTCGTCCGATCTGTTACAATGGATTCATGGTCCGATCTCCAGATCAAGAAAATGGAAGCAGGAGGTAACCGTAATCTCAATTCCTTCCTCGCTCAATACGGTATCCCTAAGGAAACTGATATTGTTTCTAAGTATAATTCAAACGCTGCTTCAATTTATCGCGATCGTATTCAAGCTCTTGCTGAAGGTCGTTCATGGCGGGATCCACCGGTTGTTAAAGAGAATTCGCATTCGAATTCGAATGCGAATGCGAATACTCGTCCTGGAAAAGGGAAGCCTCCTCTGGCTTCATCGAATGGAAGTGGTTGGGATGATAATTGGGATAATGATGATAATTATGGATCTCGTTCTGATATTAGGAGGAATCAGAGTACTGGTGATGTTATGGGATTTGTTGGTGGTGGTGGTGGAGTTACTCCGTCGAGGTCTAAATCCACGGAGGATATTTATACGAGGACACAATTGGAAGCTTCTGCTGCTAATAAGGAAGGATTCTTTGCAAGGAAGATGGCGGAGAATGAATCGCGACCGGAGGGACTTCCGCCTTCTCAGGGTGGGAAGTATGTTGGGTTTGGATCTAGTCCTGGTCCTGCTCAGAGGATATCTCCTCAAAATGATTATTTATCTGTTGTTTCTGAGGGAATTGGTAAATTATCTATGGTTGCTCAATCTGCAACCAAGGAGATTACTGCCAAGGTAAAGGACGGCGGTTATGATCACAAGGTCAATGAAACTGTCAATATTGTCACTCAGAAGACATCAGAGATTGGACACAGGACATGGGGTATAATGAAAGGGGTCATGGCATTGGCCTCACAAAAGGTTGAGGAACTCACCAAAGATTACCCGAATGGGAATTCTGATAACTGGCAACGAAATGAAAATGATAGACATGATATCAATCAAGATAATAAAAGCTGGAACTCTTCTACTAGAGAAGGACAACCTTCATCAGGTGGACACAGTAATACTTACCACTCAAACTCTTGGGATGATTGGGACAATCAAGATACAAGGAAGGAAGTACCAGCTAAAGGCTCAGCTCCTCATAAGAATGATGATTGGGCTGGTTGGGATGATGGCAAGGATGATGATGAATATGATAATAAATCTTTTGGTCATAATGGGACGTCAGGTTCTGGCTGGACTGGAGGAGGCTTTCACTAA 1329 0.4432 MAAARRLRELQSEQSNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSDLQIKKMEAGGNRNLNSFLAQYGIPKETDIVSKYNSNAASIYRDRIQALAEGRSWRDPPVVKENSHSNSNANANTRPGKGKPPLASSNGSGWDDNWDNDDNYGSRSDIRRNQSTGDVMGFVGGGGGVTPSRSKSTEDIYTRTQLEASAANKEGFFARKMAENESRPEGLPPSQGGKYVGFGSSPGPAQRISPQNDYLSVVSEGIGKLSMVAQSATKEITAKVKDGGYDHKVNETVNIVTQKTSEIGHRTWGIMKGVMALASQKVEELTKDYPNGNSDNWQRNENDRHDINQDNKSWNSSTREGQPSSGGHSNTYHSNSWDDWDNQDTRKEVPAKGSAPHKNDDWAGWDDGKDDDEYDNKSFGHNGTSGSGWTGGGFH 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04132 442 MobiDBLite consensus disorder prediction 118 201 - -
Trre13g04132 442 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 442 IPR044519 GO:0005096|GO:0016192
Trre13g04132 442 Pfam Putative GTPase activating protein for Arf 5 103 IPR001164 GO:0005096
Trre13g04132 442 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Trre13g04132 442 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Trre13g04132 442 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Trre13g04132 442 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Trre13g04132 442 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Trre13g04132 442 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Trre13g04132 442 MobiDBLite consensus disorder prediction 358 385 - -
Trre13g04132 442 MobiDBLite consensus disorder prediction 334 442 - -
Trre13g04132 442 MobiDBLite consensus disorder prediction 126 141 - -
Trre13g04132 442 MobiDBLite consensus disorder prediction 226 256 - -
Trre13g04132 442 MobiDBLite consensus disorder prediction 386 425 - -
Trre13g04132 442 CDD ArfGap_ArfGap1 3 117 - -
Trre13g04132 442 Gene3D Arf GTPase activating protein 1 136 IPR038508 -
Trre13g04132 442 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04132 Trre-Chr13 49174734 49178232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04132 5 91 C2H2 Transcription Factor Family AT4G21160 47.727 6.74e-22 94.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04132 13 49174734 49178232 Trre13g04132 13 49174734 49178232 ECH
Trre13g04132 13 49174734 49178232 Trre1g02724 1 22490855 22493467 PCT