Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04129 ATGAACAGGCTGTATAGGGGTGTTCAAGAGGTTTGTAAGGTAGACGGAGCGGAACTAGGAAGCACTACAACATCAGTCGCCGGAGGGAAAAGTGACAGAAGAGACATCCATTTCCACCGCGTTACAAAGGTTACAATACCATTGGGATTTTATGACAAGTGTCCTGTTTCAGTCTCCTTAATAGCTCGACACGGTGGTGATCGCTTTTTGCTTGACACACTAAAGACCATGTATACGATTCTCCAAGAGCAGGCTGATATTGCTGCCACAAGTAAATCATCAAAAAGTGTTGTCAACAAGGAACAATCTGCTGAGATTGCCAAAGAGAAGGGAAATCAAGCCTACAAAGATAAGCAGTGGCAGAAAGCCATTGGATTTTACACTGAAGCTATAAAACTCTGCGGCAATAACGCAACATACTACAGTAACAGGGCCCAAGCGTATCTAGAACTTGGCAGTTATCTCCAAGCTGAGGCAGATTGTACAAAAGCAATTAGTCTTGACAAAAAGAATGTGAAAGCCTACTTTCATAGAGGTACAGCTAGAGAGATGCTAAGCTACTACAAAGAAGCAGTTGATGATTTTAAATATGCTGTTGTACTTGAGCCAACCAACAAAAGGGCTGCTTTAGCTGCTGAAAAGTTGAGGAAACTATTTCAATAG 663 0.4208 MNRLYRGVQEVCKVDGAELGSTTTSVAGGKSDRRDIHFHRVTKVTIPLGFYDKCPVSVSLIARHGGDRFLLDTLKTMYTILQEQADIAATSKSSKSVVNKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEADCTKAISLDKKNVKAYFHRGTAREMLSYYKEAVDDFKYAVVLEPTNKRAALAAEKLRKLFQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04129 220 ProSiteProfiles TPR repeat profile. 138 171 IPR019734 GO:0005515
Trre13g04129 220 Gene3D Tetratricopeptide repeat domain 74 220 IPR011990 GO:0005515
Trre13g04129 220 PANTHER AMIDASE 1 41 217 - -
Trre13g04129 220 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Trre13g04129 220 SUPERFAMILY TPR-like 101 210 IPR011990 GO:0005515
Trre13g04129 220 SMART tpr_5 138 171 IPR019734 GO:0005515
Trre13g04129 220 SMART tpr_5 104 137 IPR019734 GO:0005515
Trre13g04129 220 SMART tpr_5 172 205 IPR019734 GO:0005515
Trre13g04129 220 Pfam Tetratricopeptide repeat 138 171 IPR019734 GO:0005515
Trre13g04129 220 SUPERFAMILY Amidase signature (AS) enzymes 43 77 IPR036928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04129 Trre-Chr13 49100152 49104558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04129 104 181 U-box Gene Family AT3G07370 41.026 1.27e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04129 - - gmx:100786059 301.212