Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04108 ATGAACCACTGCGTTCCAGATTTCAATTCTCCTCAAATGGATCAACAACTCTTACCTCGCCCTAAGAAACCTTACATTGCGGACGATGAGATTATGGAGCTACTATGGCAAAACGGTCAAGTTGTGACGCAGAGTCAAAATAACCGTCATGTGAAGAAACCACCGCCGGGGAGAAACTCTGACGATTCAACTCGCGGCGGAACTTCATCTGAAGTAGAAAATAATAATAATCAATATCTTTTCATGCAAGACGGTGAAATGGCTTCGTGGCTTCATTATCCAATCAACAATGATAATAATGATGTTGATGATGATTCTCCGTTCTCTGGCGATTTCCTTAACAACAGTAATATGCAAAATCCTAATCGGACTTCTCAATTGACTGAATTCAGGCGGAATCCGATGTTAGTTCCTTCTCGTCCTTCCAATCCGCCGCAACGGAGATCCGAACAAATGCAGCCGAATTTCGCGTATTTTTCTAGGCACGGTGTTAGAGCCGAGCCAGGACCGTCGTCGATTTTGAGAAATTCTGCGACGGAATCGACGGTGGTTGATTCGTGTGATACGCCAGCTACAATGCCGGCGGCAGGTTCGGAGACTGTACGAAGCTTAGCGGATCCAACGGAAGGAGAAACGGGAGTGTCGGCGCCTTGGACGATGTTTGATGAACCGGGCGGTTCGAGTAGCAGCGGCGAACCGGTTCGGATGGTAGGGGAGCAGGATCGGAAGAGGAAGGGAAGAGAAGCAGAGGAATGGGAATATCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGCCAAGAAAAATGTCAGTGTATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCGGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTTCAAGAACTTATACCTCGATCTAATAAATCTGACAAAGCTTCTATGTTGGATGAAGCAATTGAATACTTGAAGTCACTTCAATTACAAGTACAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAATTGGAATGGGGATGGGGATGGGAATGGGAATAAACAGACCAGTAATGCCATTTCCAAATATGTTATCTGGTTCTGCTTTGCCTGCAGCTGCAAATTTGGGACCAAGGTTCGCGTCCATGCCCCCTTTTCACATGCCGCATGTTCCTACGCCTGATTCATCCAGAATGCTAGCAACAAATCAGGCAGATAATATTATATTCACCTCAGTTGGAACACATGATTCAAATCAGCCGCGTATACCAAACTTCACTGATCCTTATCAACAGTACCTCGGACCCCACCAGATGCAGTTTCAATCAATGCAGAATCGGGCAATGAACCAACCAAATGTCGGCAACCCAAGTATCAGTAGGCCCCTTGAGAATCCAGAAATCCGCCAGTCAGCTGTTACCACTGGCTCTCAAAATGGTACTACTAGTATTATTGTTATATTTTCTGCCATCTATACTAGAGTATGCCAAGTTTTGTAG 1536 0.4551 MNHCVPDFNSPQMDQQLLPRPKKPYIADDEIMELLWQNGQVVTQSQNNRHVKKPPPGRNSDDSTRGGTSSEVENNNNQYLFMQDGEMASWLHYPINNDNNDVDDDSPFSGDFLNNSNMQNPNRTSQLTEFRRNPMLVPSRPSNPPQRRSEQMQPNFAYFSRHGVRAEPGPSSILRNSATESTVVDSCDTPATMPAAGSETVRSLADPTEGETGVSAPWTMFDEPGGSSSSGEPVRMVGEQDRKRKGREAEEWEYQSEDVDFESAEAKKNVSVSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTIGMGMGMGMGINRPVMPFPNMLSGSALPAAANLGPRFASMPPFHMPHVPTPDSSRMLATNQADNIIFTSVGTHDSNQPRIPNFTDPYQQYLGPHQMQFQSMQNRAMNQPNVGNPSISRPLENPEIRQSAVTTGSQNGTTSIIVIFSAIYTRVCQVL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04108 511 MobiDBLite consensus disorder prediction 43 75 - -
Trre13g04108 511 MobiDBLite consensus disorder prediction 61 75 - -
Trre13g04108 511 Pfam Helix-loop-helix DNA-binding domain 283 329 IPR011598 GO:0046983
Trre13g04108 511 SMART finulus 285 334 IPR011598 GO:0046983
Trre13g04108 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 345 IPR036638 GO:0046983
Trre13g04108 511 MobiDBLite consensus disorder prediction 236 252 - -
Trre13g04108 511 FunFam Basic helix-loop-helix transcription factor 274 337 - -
Trre13g04108 511 MobiDBLite consensus disorder prediction 179 288 - -
Trre13g04108 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Trre13g04108 511 Coils Coil 285 305 - -
Trre13g04108 511 CDD bHLH_AtPIF_like 279 342 IPR047265 -
Trre13g04108 511 Gene3D - 274 337 IPR036638 GO:0046983
Trre13g04108 511 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 468 IPR031066 -
Trre13g04108 511 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04108 Trre-Chr13 48976011 48980082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04108 1 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.533 1.72e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g04108 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04108 - - tpra:123888958 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04108 13 48976011 48980082 Trre13g04108 13 48976011 48980082 ECH
Trre13g04108 13 48976011 48980082 Trre1g02742 1 22660892 22667860 PCT