Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04107 ATGAACCACTGCGTTCCAGATTTCAATTCTCCTCAAATGGATCAACAACTCTTACCTCGCCCTAAGAAACCTTACATTGCGGACGATGAGATTATGGAGCTACTATGGCAAAACGGTCAAGTTGTGACGCAGAGTCAAAATAACCGTCATGTGAAGAAACCACCGCCGGGGAGAAACTCTGACGATTCAACTCGCGGCGGAACTTCATCTGAAGTAGAAAATAATAATAATCAATATCTTTTCATGCAAGACGGTGAAATGGCTTCGTGGCTTCATTATCCAATCAACAATGATAATAATGATGTTGATGATGATTCTCCGTTCTCTGGCGATTTCCTTAACAACAGTAATATGCAAAATCCTAATCGGACTTCTCAATTGACTGAATTCAGGCGGAATCCGATGTTAGTTCCTTCTCGTCCTTCCAATCCGCCGCAACGGAGATCCGAACAAATGCAGCCGAATTTCGCGTATTTTTCTAGGCACGGTGTTAGAGCCGAGCCAGGACCGTCGTCGATTTTGAGAAATTCTGCGACGGAATCGACGGTGGTTGATTCGTGTGATACGCCAGCTACAATGCCGGCGGCAGGTTCGGAGACTGTACGAAGCTTAGCGGATCCAACGGAAGGAGAAACGGGAGTGTCGGCGCCTTGGACGATGTTTGATGAACCGGGCGGTTCGAGTAGCAGCGGCGAACCGGTTCGGATGGTAGGGGAGCAGGATCGGAAGAGGAAGGGAAGAGAAGCAGAGGAATGGGAATATCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGCCAAGAAAAATGTCAGTGTATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCGGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTTCAAGAACTTATACCTCGATCTAATAAATCTGACAAAGCTTCTATGTTGGATGAAGCAATTGAATACTTGAAGTCACTTCAATTACAAGTACAGAGAGTACAACTTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAATTGGAATGGGGATGGGGATGGGAATGGGAATAAACAGACCAGTAATGCCATTTCCAAATATGTTATCTGGTTCTGCTTTGCCTGCAGCTGCAAATTTGGGACCAAGGTTCGCGTCCATGCCCCCTTTTCACATGCCGCATGTTCCTACGCCTGATTCATCCAGAATGCTAGCAACAAATCAGGCAGATAATATTATATTCACCTCAGTTGGAACACATGATTCAAATCAGCCGCGTATACCAAACTTCACTGATCCTTATCAACAGTACCTCGGACCCCACCAGATGCAGTTTCAATCAATGCAGAATCGGGCAATGAACCAACCAAATGTCGGCAACCCAAGTATCAGTAGGCCCCTTGAGAATCCAGAAATCCGCCAGTCAGCTGTTACCACTGGCTCTCAAAATGGTACTACTAGTATTATTGTTATATTTTCTGCCATCTATACTAGAGTATGCCAAGTTTTGTAG 1554 0.4543 MNHCVPDFNSPQMDQQLLPRPKKPYIADDEIMELLWQNGQVVTQSQNNRHVKKPPPGRNSDDSTRGGTSSEVENNNNQYLFMQDGEMASWLHYPINNDNNDVDDDSPFSGDFLNNSNMQNPNRTSQLTEFRRNPMLVPSRPSNPPQRRSEQMQPNFAYFSRHGVRAEPGPSSILRNSATESTVVDSCDTPATMPAAGSETVRSLADPTEGETGVSAPWTMFDEPGGSSSSGEPVRMVGEQDRKRKGREAEEWEYQSEDVDFESAEAKKNVSVSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRVQLMQMMSMGCGMVPMMFPGIQQYMPTIGMGMGMGMGINRPVMPFPNMLSGSALPAAANLGPRFASMPPFHMPHVPTPDSSRMLATNQADNIIFTSVGTHDSNQPRIPNFTDPYQQYLGPHQMQFQSMQNRAMNQPNVGNPSISRPLENPEIRQSAVTTGSQNGTTSIIVIFSAIYTRVCQVL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04107 517 MobiDBLite consensus disorder prediction 43 75 - -
Trre13g04107 517 MobiDBLite consensus disorder prediction 61 75 - -
Trre13g04107 517 Pfam Helix-loop-helix DNA-binding domain 283 329 IPR011598 GO:0046983
Trre13g04107 517 CDD bHLH_AtPIF_like 279 348 IPR047265 -
Trre13g04107 517 MobiDBLite consensus disorder prediction 236 252 - -
Trre13g04107 517 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 474 IPR031066 -
Trre13g04107 517 MobiDBLite consensus disorder prediction 179 288 - -
Trre13g04107 517 SMART finulus 285 334 IPR011598 GO:0046983
Trre13g04107 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Trre13g04107 517 Coils Coil 285 305 - -
Trre13g04107 517 Gene3D - 274 340 IPR036638 GO:0046983
Trre13g04107 517 FunFam Basic helix-loop-helix transcription factor 274 340 - -
Trre13g04107 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 337 IPR036638 GO:0046983
Trre13g04107 517 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04107 Trre-Chr13 48976011 48980082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04107 1 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.534 2.94e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g04107 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04107 - - tpra:123888958 779.63