Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04106 ATGGCATCACCTCAAAACTTTGCATCCGAGTTAACAGCCCTTGTTGTAGATGACAAAAAGTCCTACCAAAAGATTCATCAAATGATGTTGAATAATTTTGGAGTGAAAAGTCATGTTGTGGAAAATGGAAAAGAAGCAGTGGACATTCATTTGCATGGCAAAAAATTTGACCTAATTCTCATGGACATGGATATGCCTATCATGAATGGCATTGAGGCAACAAAGGAACTTCGTGCAATGGGAGTTTGTAGCACTATTGTTGGTGTGACGTCACGCTCTACCGAAACAGAAATGTTAAACTTTATGGAAGCTGGACTTGATGACTATCAAGAGAAACCCTTGACCAAACCAAAGCTTAGTTCCATTCTTGGTAAGATCATCAACCACAACTAG 393 0.3919 MASPQNFASELTALVVDDKKSYQKIHQMMLNNFGVKSHVVENGKEAVDIHLHGKKFDLILMDMDMPIMNGIEATKELRAMGVCSTIVGVTSRSTETEMLNFMEAGLDDYQEKPLTKPKLSSILGKIINHN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04106 130 Pfam Response regulator receiver domain 14 121 IPR001789 GO:0000160
Trre13g04106 130 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Trre13g04106 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 129 - -
Trre13g04106 130 CDD REC_hyHK_CKI1_RcsC-like 14 123 - -
Trre13g04106 130 Gene3D - 7 130 - -
Trre13g04106 130 SUPERFAMILY CheY-like 10 128 IPR011006 -
Trre13g04106 130 SMART REC_2 11 123 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04106 Trre-Chr13 48956720 48957503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04106 11 128 Response Regulator Gene Family AT3G04280 44.167 2.36e-26 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g04106 Response_reg 5.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04106 - - gmx:100794931 160.999