Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04102 ATGAATAGTGTGAAGAATAATAGAAGGGTTCACAATGATGACAAACCTTTTCCTGGTTGTTTGGGAAGAATGGTTAATCTCTTTGATTTGACTCCTACTACTGTAAATGGAAACAAGCTTCTCACCGATAAACCGCACCACGAACATGCGGCATCTCTTGCAAGAAGTCAATCAGATGTTTCGAGGACTGCAAGTCCTTCATTTGGTGACCGAATAGAAGATAAGCCGATTGTTTCTGATTTAATGAGAGCATCTTCAAATAAAAAAATAAATGGAACACCCATCAAGATGCTCATGGACCAAGAAATGTCAAAAGAAGTTGTTTCCAAGCACACTCCACCAAATGTGGTTGCAAAATTAATGGGCCTTGAAGCCCTTCCACGGGGAGAACATGGTTTAGCTGTGGAGAGAAGCCCTGGAGGAGATTGTTCTCAGCATATGTGTGGTCATTCCGGGACATCATTCAATCATTGGCAGCTGGAAGATAGGTTTATGGACAAAGAAATGCTTCATGAAGCTCATCCGAGCAGAGAACAGGTTGCTTACAAAGATATTTATGAAATATGGCTGCAATCACAGAGAACAAGCAATGTAAAAGACAAAACACCAGAGAGAGGGAAGTGGGCTGAAGATGTTAATGAGAAGAAAATGGCTCTTATTCGCCAAAAATTCATGGAAGCAAAGCGTCTTTCTACAGATGAGAAATTACGTCAATCGAAAGAGTTTGATGAAGCCTTGGAAGTTTTAAGCTCCAACAACGATCTGTTAATCAGGTTATTGGATTCTCAAAATCTTTATGAACGACAGTCTACTCCACTGGCTGAGACAAAGCGCATTACTGTTCTTAAACCTTCAAAGATGGTTGACAATGAAAAATTCAGTAGAAAGGGAAACAATAATGACAAACACATTAAGAAACCATTAAATAATGATGTTGCATGGGAGAAGAATAGTCCTGGATTCTCTCCAGCCAGTCAGAAAGTTGATGAATTTCCTGTTCAACCTACTCGAATAGTGGTATTGAAGCCTACTTCTGTGAGGGCACATGATATTAAGACGCTGGCTTCTCCAACGGCATCATCACCTCAAAATATGCAAAGTGGAAACTTCTATCACGGCCCTGAAGATGATGATGATGATCTACTGGAATCAAGAAAAGTGGCGGAAGAAATTACACAGCAGATGTTTGAACATGAAGACCTCAGGAGCTGTCAAAGAGATGAAACTGTGTATTCTTCAGTATTTTCCACAGGCTATATTGGTGATGACAGTTCATTCTACAAGTCAGATCATGAGTGTACTGCAGGGAATTCTAGTGATTTGGAAGTTATGTCGCCATCACCCAGACATTCTTGGGATTATGTTAACCGCTGTGAAAGTCCTTATTCTTCATCATCCTTCAGTCGTGCATCTGGTTCTCCCGAGTCATCAGTATGCAGAGAGGCCAAGAAACGGCTTTCTGAAAGATGGGCCATAATGGCATCTAAGAAAGGTCTTCAAGAGCAAAGACATATGCGGAGAAGCTCTACCTTGGGTGAGATGCTTGCTCTTTCAGATATAAAGAAATCTCTAATATCTGAGTTTGAAGGTATTAATAAAGAAGAAGAACCGAGTGAATCTGCTTCTTGCAGTAAAAATTTAAATGAAGAAACATGCGCAGATGGTTCTCCTAAAAACCTTCCCAGGTCAAAATCTGTCCCTATATCTCCCACTGTCTATGAAAATGGCCACTACGTTGAAGCTTGTAATAATGATGCTGGTAAAGCACCCGACTCCAAGGAGCTAACAAAGTCAAAGAGTATGAAATCGTCATTTAAAGGGAAAGTTGCAAGTTTCTTATTCTCAAGGAATAAGAAATCAATCAGAGAAAAATCTTGTTTATCTCATTCGACAGATGACTCCCAATCAACTGTTGCAGAAACATCTGTATCTCCAATAAACTCACCTGAAGTCCTTAGGAATGATATGTCTCAAAGCTTCAAAGGTGACTACTTTGGAGAGTGTTCGAATCAAAATCTATGTGAATCATCAAGTAAAACTTTATCCGATCCTGTCTCAAACAGGCAAGGCCCAGTATCTACGGAGCCTGAATTGACAGTGTCAAAGCCCACAGGGATATCAAGTGAAAACCAGGATCAGCCAAGTCCAATCTCAGTTTTAGAACCTCCATTTGAAGATGAAAATGCAGCTCATGAGTCCTTGGACTGTATGAAGGGTGGCCAGCTGGGATCACGGGTGTCTCTGAAGTCTAATTTAATTGATAAATCACCACCTATAGAATCAATAGCTCGAACCCTCTCATGGGATGACTCTTGTGCAGAGGTAGCAAATTCGTACACATTAAAGCCTTCTTTGGTTTCCTTAGACACCAAGGCAGAGGATCAAGATTTGCTCGTCTTGGTTCAGAAATTACTATCAGCTGCTGGACTTGATGATCAGGTGCAGTCTGACTCGTTTTACTCAAGATGGCATTCCCTTGAAAGTCCATTGGATCCATCATTGAGGGACAAATATGCCAATCTCAACGACAAGGAGCCTCAACCTCTCCACGAAGCAAAGCGAAGGCAGAGGAGATCTAATCAGAAGCTTGTATTTGATTGTGTCAATGTTGCACTAATAGAAATTACTGGTTATGGATCAGAAAGTTCCTTAATTGGCAGGTTGTGGAGTGGGGGCCACGGAAGGCACCAAGTCTCAGAGGGTGCACATACCCTATTGGTGGACCTGATTGTATCCCATATGAAGGAGTTGACATCTAGTGGCATGAGGTCTGTTTGGGGGGATTGTGGGGACAGTAACAGCCTGGTGGTGGAAACTGTTGTCAGAAAAGAGGTCGTGGGTAAAGGGTGGGTTGAGCTTATGGGATTGGAGATGGATGTTTTGGTGAAGGAAGTAGAGGGGAAGTTGCTAGAAGAACTTGTGGAGGATGCAGTGGTTGATTTGACAGCCAGGGTATGA 2958 0.4178 MNSVKNNRRVHNDDKPFPGCLGRMVNLFDLTPTTVNGNKLLTDKPHHEHAASLARSQSDVSRTASPSFGDRIEDKPIVSDLMRASSNKKINGTPIKMLMDQEMSKEVVSKHTPPNVVAKLMGLEALPRGEHGLAVERSPGGDCSQHMCGHSGTSFNHWQLEDRFMDKEMLHEAHPSREQVAYKDIYEIWLQSQRTSNVKDKTPERGKWAEDVNEKKMALIRQKFMEAKRLSTDEKLRQSKEFDEALEVLSSNNDLLIRLLDSQNLYERQSTPLAETKRITVLKPSKMVDNEKFSRKGNNNDKHIKKPLNNDVAWEKNSPGFSPASQKVDEFPVQPTRIVVLKPTSVRAHDIKTLASPTASSPQNMQSGNFYHGPEDDDDDLLESRKVAEEITQQMFEHEDLRSCQRDETVYSSVFSTGYIGDDSSFYKSDHECTAGNSSDLEVMSPSPRHSWDYVNRCESPYSSSSFSRASGSPESSVCREAKKRLSERWAIMASKKGLQEQRHMRRSSTLGEMLALSDIKKSLISEFEGINKEEEPSESASCSKNLNEETCADGSPKNLPRSKSVPISPTVYENGHYVEACNNDAGKAPDSKELTKSKSMKSSFKGKVASFLFSRNKKSIREKSCLSHSTDDSQSTVAETSVSPINSPEVLRNDMSQSFKGDYFGECSNQNLCESSSKTLSDPVSNRQGPVSTEPELTVSKPTGISSENQDQPSPISVLEPPFEDENAAHESLDCMKGGQLGSRVSLKSNLIDKSPPIESIARTLSWDDSCAEVANSYTLKPSLVSLDTKAEDQDLLVLVQKLLSAAGLDDQVQSDSFYSRWHSLESPLDPSLRDKYANLNDKEPQPLHEAKRRQRRSNQKLVFDCVNVALIEITGYGSESSLIGRLWSGGHGRHQVSEGAHTLLVDLIVSHMKELTSSGMRSVWGDCGDSNSLVVETVVRKEVVGKGWVELMGLEMDVLVKEVEGKLLEELVEDAVVDLTARV 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04102 985 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 1 984 - -
Trre13g04102 985 MobiDBLite consensus disorder prediction 624 650 - -
Trre13g04102 985 MobiDBLite consensus disorder prediction 630 650 - -
Trre13g04102 985 MobiDBLite consensus disorder prediction 834 856 - -
Trre13g04102 985 MobiDBLite consensus disorder prediction 837 856 - -
Trre13g04102 985 Pfam DUF761-associated sequence motif 113 127 IPR032795 -
Trre13g04102 985 MobiDBLite consensus disorder prediction 532 569 - -
Trre13g04102 985 MobiDBLite consensus disorder prediction 676 715 - -
Trre13g04102 985 MobiDBLite consensus disorder prediction 354 378 - -
Trre13g04102 985 MobiDBLite consensus disorder prediction 39 75 - -
Trre13g04102 985 Pfam Domain of unknown function (DUF4378) 801 976 IPR025486 -
Trre13g04102 985 Pfam Protein of unknown function (DUF3741) 221 264 IPR022212 -
Trre13g04102 985 MobiDBLite consensus disorder prediction 354 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04102 Trre-Chr13 48885119 48889783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04102 1 982 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 43.340 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04102 - - psat:127125933 1628.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04102 13 48885119 48889783 Trre13g04102 13 48885119 48889783 ECH
Trre13g04102 13 48885119 48889783 Trre1g02749 1 22733134 22736744 PCT