Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04089 ATGGCAGCAGCTCAAGATCATGCAGTGTCAGTGACCCCAAGAAAAAGAGTACTTGTTGTGGATGATGATGATCGTGTCCGAAAGATTCACCAAGATCAATTAAAATCACTTGGTGTCGAATCTTGTTTTGCAAGAAATGGGAAAGAAGCCATCGACATAATTTCTTCGGATTGGTCAGCTCCAACCTTTGATCTAATTCTCATGGCTAGGCATATGCCACTCATGGATGGCATTCTGACGACTATGGTATTGCGCACGATAGGGTACCCTAGTTTGATTTATGGCGTGTCGCATCGCCTTACAGAAGCAGAATGGGAAGAATTTTTTAGTGCAAGGCCAGATGATATCTATGATGAAGGGAAACCTTTGTCCATTGATACAATGAAATATATTGTTGAATCAATTCCTACTCCCAAACCTTGTTATGCATGGAGGGAAAGAGTGTCAAGGTTACCTAAACAAGACAAAGGATATTGGTACAGTTGTTTTTTTGACCAATAA 501 0.4072 MAAAQDHAVSVTPRKRVLVVDDDDRVRKIHQDQLKSLGVESCFARNGKEAIDIISSDWSAPTFDLILMARHMPLMDGILTTMVLRTIGYPSLIYGVSHRLTEAEWEEFFSARPDDIYDEGKPLSIDTMKYIVESIPTPKPCYAWRERVSRLPKQDKGYWYSCFFDQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04089 166 SUPERFAMILY CheY-like 14 134 IPR011006 -
Trre13g04089 166 ProSiteProfiles Response regulatory domain profile. 16 136 IPR001789 GO:0000160
Trre13g04089 166 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 140 - -
Trre13g04089 166 Gene3D - 3 138 - -
Trre13g04089 166 SMART REC_2 15 132 IPR001789 GO:0000160
Trre13g04089 166 Pfam Response regulator receiver domain 17 114 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04089 Trre-Chr13 48777998 48778603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04089 16 109 Response Regulator Gene Family AT3G04280 41.489 9.26e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g04089 Response_reg 3.9e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04089 - - tpra:123893190 297.745