Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04087 ATGCTGCCGTCGGTCATGTTCCTCTTTGCTCTTCTTAACTTACTATTCTCTTCTCAAGTGGAGTCATTTTCCCTGAGTGTGCGGTTTGCTTCATTGGAACAAACTAAATTTTGGTTAGTTAAGCCTTCTTCTGGACCAATTTCTGCACCCGTGCCATCTCCATCCTATCAAGGTCCTAGTGTGGCTCCAAGACACAAACATCATCATCGTCACCGACACCATCATAGCATGAGACCATATATAGGGGCTCCACCCCCTTCCACAGACCAAGCTTGCGATCAAATATGTACGGATCCTCTCACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCTATGAAAGTCAGACTTACACTGGATGTAGCTCCTTATGCTGTTTTTCCAGTAATGACAGAGTTAGAGCATGAAGTTGCGCTAGGCACATATTTAGAACAGAGTCAGGTGGTGATAATGGGTGCAACTGCTGACAGTCAAAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCATTGGGAGAAAAATTTGACAACACAACTGCAGCCCTGACATACGAGAGGTTTTGGCACAAAAAAGTTCCTCTAAATAGGAGCATATTTGGTGATTATGCTGTCGTGAACATTACATATCCAGGAATTCCATCTTCGCCACCATATGAAACTTCAATTGGGAGCGGTCCCAGTCAAAATGCTGATGGTAGTCTGCCATTCAGCGCCGATTTTGCTAGCAAGAACCAGAAAACGAATCTAAGAACCATAATCATCATTGCTTTGTCTTCTTTTGTGCTCTTGCTGGTTTTGGTTGCAGCATTTTCTGTTGCTTTGAAATGGAGGAAGACTAGGGGACCATCAAGTGCTGTTGGCCCAGCATTTACATCTTCTCTAAACAAGAGATCTGGTTTGGGGTCTGTGTTGTCAAGCAGTATTACAAGCTCGACATCAGTGTCCCTCATGTCCACAATGCCCACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGATTGAGAAAGCAACAGATAAGTTTAATTCAAAGAGAGTATTAGGGGAAGGGGGATTTGGACGTGTGTATAGTGGGACATTGGAAGATGGGGCTGAAGTTGCAGTGAAGCTCCTTACAAGAGATAATAATCAGAATGGAGACCGTGAATTTATTGCAGAAGTTGAGATGTTAAGCCGTTTACATCATCGTAATCTAGTGAAACTTATTGGAATATGCATTGAAGGGCGCAAGCGTTGCCTGGTATATGAGCTAGTTCCTAATGGCAGTGTGGAGTCCCATCTGCATGGTGATGATAAGAATAGGGGACCTCTAGATTGGGAAGCACGAATGAAAATTGCCCTTGGAGCTGCGAGAGGATTGGCCTATCTTCACGAGGATTCTAATCCCCGTGTAATTCATCGGGACTTCAAAGCCAGCAATGTGTTATTAGAAGACGACTTTACCCCTAAAGTTTCTGATTTTGGTTTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCTACACGGGTGATGGGGACTTTCGGGTATGTTGCCCCAGAATATGCAATGACGGGCCATTTACTGGTTAAAAGTGATGTTTATAGTTATGGCGTTGTGCTTCTTGAACTTCTCACAGGCAGAAAACCAGTCGATATGTCTCAACCCCAGGGACAGGAGAATCTTGTAACTTGGGCACGGTCACTGTTGACTAGCAGAGAAGGTTTAGAACAGCTAGTGGACCCATCTTTGGCCGGAAGTTACAACTTCGATGACATGGCAAAGGTAGCAGCTATTGCATCAATGTGTGTTCACTCCGAGGTCACACAGAGACCTTTTATGGGTGAAGTAGTGCAGGCTCTTAAATTGATATACAATGACACTGATGAGACTGGTGGAGATTATTGTAGTCAGAAGGACTCCTCTGCTCAGGAGTCTGATTTTAGAGGCGAGCTTGCCCCTTCTGATAGCAGTTGGTGGAACGGTGGAGGGTTAACGCCTCGATTAACTTATGGACAGGCATCTTCCTTCATCACGATGGAATACAGTTCTGGTCCACTTGAAGATATGGAAAACAGACCGTTTTCAACTTCAAGCTTTAATGGAGATGAGCTATCTTTACCAATTAGGCATGGGAATAGATCAGGTCCCTTGAGAACAATTCGAAGCAAGTTATCCTTATATAGATTTTCTGGAAGTCGGAGTGAACACGGGGAACTTTCTTCCAAGCGAAATTGGATATGA 2235 0.4362 MLPSVMFLFALLNLLFSSQVESFSLSVRFASLEQTKFWLVKPSSGPISAPVPSPSYQGPSVAPRHKHHHRHRHHHSMRPYIGAPPPSTDQACDQICTDPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELEHEVALGTYLEQSQVVIMGATADSQNQGRTIVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSIFGDYAVVNITYPGIPSSPPYETSIGSGPSQNADGSLPFSADFASKNQKTNLRTIIIIALSSFVLLLVLVAAFSVALKWRKTRGPSSAVGPAFTSSLNKRSGLGSVLSSSITSSTSVSLMSTMPTSILSVKTFSLSEIEKATDKFNSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTRDNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRKRCLVYELVPNGSVESHLHGDDKNRGPLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARSLLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHSEVTQRPFMGEVVQALKLIYNDTDETGGDYCSQKDSSAQESDFRGELAPSDSSWWNGGGLTPRLTYGQASSFITMEYSSGPLEDMENRPFSTSSFNGDELSLPIRHGNRSGPLRTIRSKLSLYRFSGSRSEHGELSSKRNWI 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04087 744 Gene3D Transferase(Phosphotransferase) domain 1 422 643 - -
Trre13g04087 744 Pfam Protein tyrosine and serine/threonine kinase 347 618 IPR001245 GO:0004672|GO:0006468
Trre13g04087 744 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Trre13g04087 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Trre13g04087 744 CDD STKc_IRAK 351 621 - -
Trre13g04087 744 MobiDBLite consensus disorder prediction 44 78 - -
Trre13g04087 744 Gene3D Phosphorylase Kinase; domain 1 316 421 - -
Trre13g04087 744 SUPERFAMILY Protein kinase-like (PK-like) 322 621 IPR011009 -
Trre13g04087 744 PANTHER OS01G0750732 PROTEIN 84 639 - -
Trre13g04087 744 MobiDBLite consensus disorder prediction 631 652 - -
Trre13g04087 744 FunFam receptor-like serine/threonine-protein kinase ALE2 318 421 - -
Trre13g04087 744 MobiDBLite consensus disorder prediction 62 78 - -
Trre13g04087 744 FunFam Receptor-like serine/threonine-protein kinase ALE2 422 640 - -
Trre13g04087 744 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04087 Trre-Chr13 48752898 48759189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04087 95 627 Receptor kinase-like Gene Family AT5G56890 61.172 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trre13g04087 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04087 - - gmx:100792309 1268.83