Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04080 ATGGCAACAACTCAAGGTCAAGTCATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCCTTAACAATCGAAGATGTCGAAGTCGCTCCTCCTCAAGCCAACGAAGTCCGAATCCAAATCCTCTTCACCGCTCTTTGCCACACCGATGCTTATACCTGGAGCGGCAAAGATCCCGAAGGCCTTTTCCCTTGCATTCTCGGTCACGAAGCTGCAGGGATTGTTGAGAGTGTTGGTGAAGGTGTGACTGATGTTAAGCCTGGGGATCATGTGATCCCGTGTTACCAAGCTGAGTGTGGAGAATGTAAGTTTTGTAAATCCGGAAAGACGAATTTGTGTGGCAAGGTTCGTGCTGCTACTGGTGTTGGAGTTATGATGACGGATCGTAAGCCACGGTTTTCTATTAAAGGGAAACCTATTTATCATTTTATGGGGACTTCTACTTTTAGTCAGTATACTGTTGTTCATGATGTTAGTGTTGCTAAGATTCATCCAGATGCTCCTTTGGAAAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACCGGCCTTGGAGCTGTCTGGAACACTGCTAAAGTTGAGCCAGGGTCAATTGTTGCTATCTTCGGCCTTGGAACTGTTGGGCTTGCTGTTGCGGAGGGTGCAAAATCTGCCGGCGCATCACGGGTTATTGGCATAGATATTGATAGCAGCAAATATGATATAGCGAAAAACTTTGGAGTCACCGAGTTCATTAATCCAAAAGACCACGAGAAACCAATTCAGCAAGTCATAAGTGATCTAACAGATGGAGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTTTCCGTGATGAGATCTGCTTTGGAATGCTGCCACAAGGGATGGGGAACATCAGTTATTGTAGGTGTTGCAGCATCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGACCGGGCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTTAAGAGCAGGTCACAGGTGCCTTGGCTTGTTGAGAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACTCATAATTTGACTCTTGCGGAAATCAACAAGGCTTTCGATCTTATGCATGAAGGGAAATGCCTCCGTTGTGTGCTTGCATTGCATGTATGA 1143 0.4567 MATTQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMMTDRKPRFSIKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRVIGIDIDSSKYDIAKNFGVTEFINPKDHEKPIQQVISDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLAEINKAFDLMHEGKCLRCVLALHV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04080 380 Gene3D - 183 321 - -
Trre13g04080 380 Pfam Zinc-binding dehydrogenase 207 329 IPR013149 -
Trre13g04080 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Trre13g04080 380 SUPERFAMILY GroES-like 327 376 IPR011032 -
Trre13g04080 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Trre13g04080 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Trre13g04080 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 14 201 - -
Trre13g04080 380 SUPERFAMILY GroES-like 4 198 IPR011032 -
Trre13g04080 380 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Trre13g04080 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Trre13g04080 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 183 321 - -
Trre13g04080 380 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Trre13g04080 380 Gene3D - 14 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04080 Trre-Chr13 48690912 48694020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04080 1 332 Monolignol Biosynthesis Gene Families AT1G72680 26.113 2.90e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04080 K00121 - bvg:104899321 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04080 13 48690912 48694020 Trre13g04080 13 48690912 48694020 ECH
Trre13g04080 13 48690912 48694020 Trre1g02774 1 22942245 22947784 PCT