Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04077 ATGGGAGATCAAGAGAAAGGAAAAGAGCTGATGGAGCCTCAAAATTCGGAAACCAAATTAACAGCGCTGGTTGTAGATGACGATAAGCTTGTTAGAATGATTCATCAAGGTTTGTTGAAAAGAGCTGGTGTGAAGAATGAGGCTGTGAAAAATGGTAAAGAAGCTGTAGATATTCATTACAGTGGCCAAAGATTTGATATTATACTGATGGATAAGGAAATGCCAATCATGACTGGGATTGAGGCAACCAAGAAACTGCGATCAATGGGAATAGTTAGCAGGATTGTTGGTGTGTCGTCGTGTACAGAAGCAGAAAAACAAGACTTCATGAAAGCAGGGATAGATGACTATCAAGTGAAACCACTGACCATTGCTGTGGTTAATTCTATTCTTGATGTTGTAAAAGCTAGCAAGTAG 417 0.3957 MGDQEKGKELMEPQNSETKLTALVVDDDKLVRMIHQGLLKRAGVKNEAVKNGKEAVDIHYSGQRFDIILMDKEMPIMTGIEATKKLRSMGIVSRIVGVSSCTEAEKQDFMKAGIDDYQVKPLTIAVVNSILDVVKASK 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04077 138 SMART REC_2 20 130 IPR001789 GO:0000160
Trre13g04077 138 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 134 - -
Trre13g04077 138 SUPERFAMILY CheY-like 19 134 IPR011006 -
Trre13g04077 138 CDD REC_hyHK_CKI1_RcsC-like 23 131 - -
Trre13g04077 138 ProSiteProfiles Response regulatory domain profile. 21 135 IPR001789 GO:0000160
Trre13g04077 138 Pfam Response regulator receiver domain 23 126 IPR001789 GO:0000160
Trre13g04077 138 Gene3D - 2 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04077 Trre-Chr13 48658992 48659589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04077 20 131 Response Regulator Gene Family AT3G04280 45.217 1.43e-26 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g04077 Response_reg 9.7e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04077 - - cam:101506170 186.422