Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04059 ATGGATTCAACTTTGTGGAATTTGAATTGGAATTCGAATACCCTTTTGAGTAAGATCCTTGGATTGCCTATTTTGGAACTTGTGGCAATATGTGTTAATTTGGTTGTTCTTGTTTTGTTTCTATTGAGGGAGGTTTTTGTTTGTGTTGTTGGTGGAAGAGTTTGGTTTTTTAAGGATAATAATAATAATAATAATGTTGTTGTTGTTGGCAATGGGGGTTTGATTCGTGAAGAAACGGTTGAGGTTAGAATTGGGACATGGTTTAAGGTATCTGTGTTGTCTTGTTTTTATGTTTTGTTGGTGCAAGTTTTGGTTTTGGGATTTGAGGGTGTTGCTTTGATTAAGGACAAGTTTGTGGTTGTGGAAGATTTGTCTCTACTTTCTGTGCCGTTTGTGCAAAGTTTGGTTTGGATTGTTTTGTGCTTCACTGCTTTGCATTGCAAGTACAAGGTGTCTCAGAAGTTTCCAATTTTGCTGAGAGTTTCTTGGTTTGTGCTGTTTGTTGTTTGTTTGTGTGGTTTATATGTTGATGGGAGAGGGTTTTGGGTGGAAGGTTCTAAGCATATGCGTTCTCATGTTTTGGCCAATTTCGCTGTTACCCCTGCTCTTGCCTTCTTGTGTTTTGTTGCAATTAGGGGTGTTTCTGGGATACAAGTTTGTAGCAACGCTGAGAATCAACAGCCATTGCTTCTTGATGAAGAGGAAGATGAAGAACCGGGGTGCCTCAAGGTTACTCCTTATAGCGATGCTGGACTTTTTAGTTTGGCTACGTTGTCTTGGCTTAACTCAATTCTTTCCATTGGTGCAAAGAGACCACTTGAGCTTAAGGACATTCCCCTTGTTGCTCCTAAAGATCGAGCCAAAGCAAATTTTAAGGTTTTGAATTCAAATTGGGAGAAAATGAAGGCTGAAAACACGTCGACTCAGCCTTCATTAGCTTGGACACTTCTGAAGTCATTCTGGAAGGAGGCAGCTATTAATGCCATTTTTGCTGGTGTCACTACTCTTGTCTCATATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGAGTGGTATAGAGACTTACCCTCATGAGGGGTATGTCCTTGCAGGGATATTCTTTGTTGCAAAGCTTGTGGAGACCTTCACAACGAGGCAGTGGTATCTAGGAGTGGACATTTTGGGGATGCATGTTAGGTCCGCTTTAACAGCGATGGTATATCAAAAGGGGCTTAGGTTATCGAGCTTAGCCAGGCAAAGTCACACAAGTGGTGAGATTGTTAACTACATGGCTATTGATGTTCAGAGGGTAGGGGACTATGCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTATTCTAGCCCTCGCAATTTTGTATAAGAATGTTGGAATTGCTTCCATTGCGACACTTGTTGCCACAATCATTTCTATTATAGTCACTATTCCCGTGGCTCGGGTCCAAGAAGATTACCAAGACAAATTAATGGCTGCTAAGGATGAAAGAATGAGAAAAACATCTGAGTGCCTAAGGAACATGAGGATTCTCAAGCTGCAGGCTTGGGAGGATAGATATCGAATAAGATTAGAGGAAATGCGTGGAGTAGAGTACAAGTGGCTTAGGAAAGCCCTATATTCTCAGGCTTTCATAACTTTCATGTTCTGGAGCTCACCTATATTTGTTTCAGCTGTCACTTTCGCTACTTGCATATTGTTGGGCGGTAAGCTAACTGCAGGAGGTGTACTTTCTGCTCTAGCGACTTTCAGGATCCTCCAAGAACCGCTGAGGAATTTTCCAGACTTGGTATCTACAATGGCTCAGACAAAAGTCTCTGTTGATCGTTTATCTTGTTTCCTACTCGAGGAAGAATTGCAAGAAGATGCAACTATTGTCTTGCCACAAGGAATTTCCAACATTGCCATAGAAATTAAGGATAGTGAATTCTCTTGGGACCTTTCAGCTGCCAGGCCTACTCTTTCTGATATAAATATGAAAGTTGAAAAAGGGATGCGTGTTGCTGTTTGTGGTACGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAAATTCCTAAGCTTTCTGGTGAAGTCAGTGTGTGTGGTTCTTCTGCATATGTCTCCCAATCGGCGTGGATACAATCAGGAACTATAGAAGAAAATATACTCTTTGGAAGCCCAAAGGACAAAGCAAAGTACAAGAATGTTATTCATGCCTGTTCACTGAAAAAGGATCTAGAACTTTTCTCACATGGAGATCAGACAATTATTGGTGATAGAGGTATAAACCTAAGCGGGGGTCAGAAACAGCGGGTACAGCTTGCCCGGGCGCTCTACCAAGATGCTGATATTTATCTTCTAGATGATCCCTTCAGCGCAGTTGACGCGCACACCGGATCAGAGTTGTTTAGGGAGTATATATTGACGGCACTAGCAAATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTACTGATTTGATACTGGTTCTCAAGGAAGGTTGCATCATACAAGCTGGAAAGTATGATGATCTTTTACAAGCAGGAACAGATTTTAAAGCTCTAGTTTCAGCTCACCATGAAGCCATAGAGGCTATGGATATCCCTGCTCACTCCTCTGAAGATTCAGATGAAAATTTATCATTGGAGGCATCTGTTATGACCAGTAAGAAGTCCATGTGTTCTGCTAACGATATCGACAGTTTGACAAAGGAAATGCAAGAGGGACCATCATCTTCAGATCAAAAAACAACTAAGGAGAAGAAAAAAGCAAAAAGGTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTAAGCATGAAGGTGTATCTTTCATACATGGCAGCGGCATATAAAGGCTGGTTAATTGCACCCATAATCATAGCACAAGCGTTATTTCAGTTCCTTCAGATTGCTAGTAACTGGTGGATGGCGTGGGCTAACCCTCAAACAGAAGGAGATGAGCCCAAAGTAACTCCCATGGTTCTTCTTCTTAATTACATGCTCCTTGCTTTTGGCAGTTCTTTGTTTATATTCATAAGGGCTGTTCTAGTCGCTACATTTGGTCTCACGGCTGCACAGAAGCTATTCTTGAAGATGCTTAGATGTGTTTTCCATGCACCGATGTATTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAACCGGGTTTCAGTTGATCAAAGTGTTGTGGATCTTGACATCCCTTTTAGACTTGGTGGGTTTGCTGCAACAACAATACAGCTTATTGGTATTGTTGGCGTAATGACAGAAGTGACATGGCAAGTTTTACTCTTAGTCATCCCAATGGCCATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCGAGAGAACTGGTCAGAATTGTAAGCATCCAGAAATCACCAATTATAAATCTTTTTGGTGAATCAATTGCTGGAGCATCCACCATCAGGGGTTTCGGACAAGAAAAAAGGTTCATGAAGCGAAACCTCTATCTTCTTGATTGTTTTGCACGACCTTTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTCTGCCTGCGTATGGAGTTACTGTCCACCTTTGTGTTTGCTTTCTGCATGGTGTTACTTGTTAGCTTTCCCCGTGGAACTATTGACCCAAGCATGGCTGGACTTGCTGTGACATATGGTCTGAACTTAAATGCGCGCTTATCCCGTTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCCCCAGCAATAATTGAAGATTCTCGCCCTCCATCCTTATGGCCTGAAAATGGCACAATAGAAATAATTGATTTGAAGGTCCGTTACAAAGAAAATCTTCCTTTGGTGCTTCATGGAGTATCATGCACATTTCCTGGTGGAAAGAATATAGGGATAGTTGGACGAACCGGCAGTGGCAAATCTACTTTGATTCAAGCATTATTTCGATTGATTGAACCAGAAGATGGAAGTATCCGCATAGACAACATCAATATTTTAGAAATTGGTCTTCATGACCTCCGAAGCCATCTCAGTATCATACCACAGGATCCTACCTTATTTGAAGGGACCATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGCGATTTGGGAGGCGCTAGATAAGTCTCAACTTGGAGATATCATTCGTGAGAAAGGACAAAAGCTTGATACGCCAGTTATAGAAAATGGAGACAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGCCGAGCTCTACTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCCGTCGATGCTGCCACTGATAATCTTATCCAGAAGATCATTCGAACAGAGTTCAAAGACTGCACTGTGGTCACCATTGCGCATCGTATTCCTACTGTCATTGACAGTGATCAAGTTCTGGTGCTCAGTGATGGTCGAGTTGCTGAGTTTGACACCCCTTTACGACTATTAGAGGACAAATCATCCATGTTTCTAAAGTTGGTGACTGAGTATTCCTCACGGACAAGTGGTATGCCAGAACTTTAG 4593 0.4167 MDSTLWNLNWNSNTLLSKILGLPILELVAICVNLVVLVLFLLREVFVCVVGGRVWFFKDNNNNNNVVVVGNGGLIREETVEVRIGTWFKVSVLSCFYVLLVQVLVLGFEGVALIKDKFVVVEDLSLLSVPFVQSLVWIVLCFTALHCKYKVSQKFPILLRVSWFVLFVVCLCGLYVDGRGFWVEGSKHMRSHVLANFAVTPALAFLCFVAIRGVSGIQVCSNAENQQPLLLDEEEDEEPGCLKVTPYSDAGLFSLATLSWLNSILSIGAKRPLELKDIPLVAPKDRAKANFKVLNSNWEKMKAENTSTQPSLAWTLLKSFWKEAAINAIFAGVTTLVSYVGPYMISYFVDYLSGIETYPHEGYVLAGIFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYQKGLRLSSLARQSHTSGEIVNYMAIDVQRVGDYAWYLHDMWMLPLQIILALAILYKNVGIASIATLVATIISIIVTIPVARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEYKWLRKALYSQAFITFMFWSSPIFVSAVTFATCILLGGKLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSVDRLSCFLLEEELQEDATIVLPQGISNIAIEIKDSEFSWDLSAARPTLSDINMKVEKGMRVAVCGTVGSGKSSFLSCILGEIPKLSGEVSVCGSSAYVSQSAWIQSGTIEENILFGSPKDKAKYKNVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALANKTVIFVTHQVEFLPATDLILVLKEGCIIQAGKYDDLLQAGTDFKALVSAHHEAIEAMDIPAHSSEDSDENLSLEASVMTSKKSMCSANDIDSLTKEMQEGPSSSDQKTTKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGWLIAPIIIAQALFQFLQIASNWWMAWANPQTEGDEPKVTPMVLLLNYMLLAFGSSLFIFIRAVLVATFGLTAAQKLFLKMLRCVFHAPMYFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFAATTIQLIGIVGVMTEVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPRGTIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDSRPPSLWPENGTIEIIDLKVRYKENLPLVLHGVSCTFPGGKNIGIVGRTGSGKSTLIQALFRLIEPEDGSIRIDNINILEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKAIWEALDKSQLGDIIREKGQKLDTPVIENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDAATDNLIQKIIRTEFKDCTVVTIAHRIPTVIDSDQVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVTEYSSRTSGMPEL 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04059 1530 ProSitePatterns ABC transporters family signature. 764 778 IPR017871 GO:0005524|GO:0016887
Trre13g04059 1530 FunFam ABC transporter C family member 5 928 1265 - -
Trre13g04059 1530 FunFam ABC transporter C family member 10 308 621 - -
Trre13g04059 1530 FunFam ABC transporter C family member 3 1267 1519 - -
Trre13g04059 1530 CDD ABC_6TM_ABCC_D2 965 1259 IPR044726 GO:0140359
Trre13g04059 1530 Gene3D - 616 882 IPR027417 -
Trre13g04059 1530 SMART AAA_5 666 847 IPR003593 GO:0016887
Trre13g04059 1530 SMART AAA_5 1310 1495 IPR003593 GO:0016887
Trre13g04059 1530 Pfam ABC transporter 1301 1449 IPR003439 GO:0005524
Trre13g04059 1530 CDD ABC_6TM_ABCC_D1 326 613 IPR044746 GO:0140359
Trre13g04059 1530 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 325 605 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04059 1530 CDD ABCC_MRP_domain2 1282 1502 - -
Trre13g04059 1530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 639 862 IPR003439 GO:0005524
Trre13g04059 1530 SUPERFAMILY ABC transporter transmembrane region 313 613 IPR036640 GO:0005524|GO:0016020
Trre13g04059 1530 FunFam ABC transporter C family member 5 624 871 - -
Trre13g04059 1530 Gene3D ABC transporter type 1, transmembrane domain 306 615 IPR036640 GO:0005524|GO:0016020
Trre13g04059 1530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1284 1518 IPR003439 GO:0005524
Trre13g04059 1530 SUPERFAMILY ABC transporter transmembrane region 962 1264 IPR036640 GO:0005524|GO:0016020
Trre13g04059 1530 Pfam ABC transporter transmembrane region 969 1209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04059 1530 Pfam ABC transporter transmembrane region 327 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04059 1530 Pfam ABC transporter 657 791 IPR003439 GO:0005524
Trre13g04059 1530 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 968 1237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04059 1530 Gene3D - 1267 1520 IPR027417 -
Trre13g04059 1530 Gene3D ABC transporter type 1, transmembrane domain 926 1265 IPR036640 GO:0005524|GO:0016020
Trre13g04059 1530 MobiDBLite consensus disorder prediction 908 939 - -
Trre13g04059 1530 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 247 1522 - -
Trre13g04059 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1274 1513 IPR027417 -
Trre13g04059 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 861 IPR027417 -
Trre13g04059 1530 CDD ABCC_MRP_domain1 639 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04059 Trre-Chr13 48497533 48505042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04059 639 855 Calmodulin-binding Proteins AT2G36910 31.356 6.21e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04059 - - gmx:100790550 2527.67