Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04055 ATGAAGAAGAAAAAAATGCAGATGAAAACCAAGTTTTTCATATTCTTCTGTTACATTGTAATTTTTTGTTTCTCTTATAGTTTTTCTGCTGCTTCAAATGATGAAGTATCAGCTTTACTTTCTATAAAATCAGGTCTTGTTGATCCTTTAAACAGTCTTCATGATTGGAAGTTAGATGCAGATCATTGTAATTGGACCGGCGTCGAATGCAACTCGGCCGGAACCGTAGAGAATCTTAATCTTTCTCACAAGAATCTGAGTGGTATAGTATCCAATGATATACAAAAACTTCAAAATCTTACTTCTCTTAACTTATGTTGCAATGCATTTTCATCACCTTTTCCAAAATCTATAGTAAATCTTACCACATTGAGCATTCTTGATGTAAGTCAGAATTTCTTCATTGGTGAATTTCCATTAGGATTTGGAAAGGCGTTGAAACTCGCGAGCTTAAATGTTTCGAGCAATGAGTTCACAGGTTCGATTCCTGTGGACATTGGAAATGTAACTTCATTAGAAATGCTTGATCTTAGAGGCAGTTTCTTTGAAGGTTCAATTCCGAAATCATTCGGAAACTTGAATAAGTTGAAGTTTCTTGGTTTATCTGGGAATAATCTCACTGGAAAAATTCCTGGTGAGCTTGGAAAACTTTCATCATTGGAGTATATGATTCTTGGATATAACGAATTCGAAGGTGAGATTCCATCGGAATTTGGAAATCTTACTAGTCTAAAGTATCTTGATTTAGCAGTTTCAAATCTTGGTGGTGAGATTCCAAATGAATTAGGAAATCTTAAGTTATTGGATACACTTTTTTTATACAATAACAATTTTGAAGGAAGAATTCCATCACAAATTGGTGACATTACTTCTTTGAAGTTTTTGGATTTTTCTGATAACAATTTGTCAGGAAAAATTCCAGATGAAATGAGTCTTCTGAAGAGTTTGAAGCTTCTGAATTTCATGGGAAATAAGTTATCTGGTTTTGTTCCTTCTGGAATTGGTAACTTGCCTCAACTAGAGGTTCTTGAGCTATGGAACAATTCATTATCAGGTCCATTGCCTAGTAACCTCGGCGAGAATTCACCGCTGCAATGGTTGGATGTATCATCCAATTCACTCTCTGGTGAAATTCCAGAAACTCTTTGCAGGAAAGGAAATCTCACTAAGCTCATACTTTTCAACAATGCTTTCTCCGGTCCAATTCCATCAAGCCTATCGACATGTTCTTCACTTGTTCGTGTTCGAATTCACAATAATTTTATTTCTGGTAAAGTTCCTGTTGGTCTTGGCAAGCTTGAGAAGCTTCAAAGGTTAGAATTAGCTAACAATAGTCTCACTGGTGAAATTCCAGATGATATTCCTTCTTCCGCGTCGCTTTCTTTCATTGATCTCTCAAGAAATAAACTTCATTCTTCTCTACCTTCCACCATTCTTTCCATTTCAAATCTTCAAGTTTTCATGGTCTCACATAACAACTTAGAAGGTAAAATTCCTCACCAATTTCAGGACTCTCCTTCACTTACTGTTCTTGACCTCTCATCGAATCATTTGTCCGGAACCATTCCAGAAAGCATAGGTTCATGTCAAAAATTAGTAAATTTGAACCTTCAAAATAACCTTTTGATTGGTGAAATCCCAAAAACATTAGCTAATATGCCTACATTAGCCATACTTGATCTTTCCAACAATTCGTTGACCGGTCATATACCTGAAAACTTTGGTTCATCACCTGCTCTTGAAGCATTTAATGTCTCATACAACAAGCTTGAAGGTTCTGTGCCAGAAAATGGTATGCTGAGAACTATAAACCCGAATAATCTCGTCGGAAATGATGGCCTATGTGGTGGTATCCTCCCTTCATGTGATCAAAACTCAGCATACTCCTCAAGACATGGAAGTTCACATGAAAAGCACATTATCACAGGATGGATTATTGGAATATCATCAATTCTAGCCATTGGAATTACAATTTTGGTAGCAAGATCTTTATACGTAAGGTGGTACACCGGCGGTTTTTGCTTCAGAGAGAGATTTTATAAAGGTAGCAAAGGGTGGCCATGGAGATTGATGGCATTTCAGAGACTTGGTTTCACAAGCACTGACATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGAATGGGAGGTACCGGCGTTGTTTACAAGGCCGAGGTACCGCATTCTAACACGGTTGTGGCAGTGAAAAAGTTGTGGAGATCAGGAAATGATGTGGAAGTAGGAGGAGGAGGCAGTGATGAACTTGTTGGAGAGGTGAACCTTTTAGGAAGATTAAGACATAGGAACATTGTTAGATTATTAGGGTTTCTTCATAATGACACTGATTTGATGATAGTTTATGAATTTATGCCGAATGGAAACCTTGGAGATGCCTTGCATGGTAAGCAAGCAGTTAGACAGCTTGTGGATTGGGTTTCAAGATATAATATAGCTTTAGGAGTTGCTCAAGGACTTGCTTATCTTCACCATGACTGTTATCCACCGGTTATTCATCGCGACATTAAGTCAAATAATATACTTCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGATTGGCCAAGATGATGGTCCGGAAGAACGAAACGGTCTCCATGGTTGCTGGTTCTTATGGCTACATTGCTCCTGAATATGGATATGCATTGAAGGTGGATGAAAAGATTGATGTATACAGTTATGGAGTAGTTTTACTAGAGCTTCTAACAGGAAAGAGACCATTAGATGCAGAATTTGGAGAAAGTGTAGACATTGTAGAATGGATTAGAAGGAAGATTAGAGATAACAAATCTCTAGAAGAAGCATTAGATCCAAGTGTAGGAAACTGCAGACATGTTATAGAAGAGATGCTTTTAGTTTTAAGAATAGCAGTTATTTGCACTGCTAAGCTTCCTAAAGAAAGACCAAGTATGAGAGATGTGATAATGATGCTTGGAGAGGCAAAACCAAGAAGAAAAATCAGTGGAAACAATGAAACATCTTTAGCAGCTAACAACAATAACAAGGAGATGTCAGTTTTTAGCACATCACCAGTTAGTGGCCTTCTTTAG 3072 0.3737 MKKKKMQMKTKFFIFFCYIVIFCFSYSFSAASNDEVSALLSIKSGLVDPLNSLHDWKLDADHCNWTGVECNSAGTVENLNLSHKNLSGIVSNDIQKLQNLTSLNLCCNAFSSPFPKSIVNLTTLSILDVSQNFFIGEFPLGFGKALKLASLNVSSNEFTGSIPVDIGNVTSLEMLDLRGSFFEGSIPKSFGNLNKLKFLGLSGNNLTGKIPGELGKLSSLEYMILGYNEFEGEIPSEFGNLTSLKYLDLAVSNLGGEIPNELGNLKLLDTLFLYNNNFEGRIPSQIGDITSLKFLDFSDNNLSGKIPDEMSLLKSLKLLNFMGNKLSGFVPSGIGNLPQLEVLELWNNSLSGPLPSNLGENSPLQWLDVSSNSLSGEIPETLCRKGNLTKLILFNNAFSGPIPSSLSTCSSLVRVRIHNNFISGKVPVGLGKLEKLQRLELANNSLTGEIPDDIPSSASLSFIDLSRNKLHSSLPSTILSISNLQVFMVSHNNLEGKIPHQFQDSPSLTVLDLSSNHLSGTIPESIGSCQKLVNLNLQNNLLIGEIPKTLANMPTLAILDLSNNSLTGHIPENFGSSPALEAFNVSYNKLEGSVPENGMLRTINPNNLVGNDGLCGGILPSCDQNSAYSSRHGSSHEKHIITGWIIGISSILAIGITILVARSLYVRWYTGGFCFRERFYKGSKGWPWRLMAFQRLGFTSTDILACIKETNVIGMGGTGVVYKAEVPHSNTVVAVKKLWRSGNDVEVGGGGSDELVGEVNLLGRLRHRNIVRLLGFLHNDTDLMIVYEFMPNGNLGDALHGKQAVRQLVDWVSRYNIALGVAQGLAYLHHDCYPPVIHRDIKSNNILLDANLEARIADFGLAKMMVRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDAEFGESVDIVEWIRRKIRDNKSLEEALDPSVGNCRHVIEEMLLVLRIAVICTAKLPKERPSMRDVIMMLGEAKPRRKISGNNETSLAANNNNKEMSVFSTSPVSGLL 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04055 1023 Gene3D Transferase(Phosphotransferase) domain 1 790 1012 - -
Trre13g04055 1023 PANTHER UNNAMED PRODUCT 172 918 - -
Trre13g04055 1023 SUPERFAMILY Protein kinase-like (PK-like) 703 985 IPR011009 -
Trre13g04055 1023 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 32 180 - -
Trre13g04055 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Trre13g04055 1023 Gene3D Ribonuclease Inhibitor 189 256 IPR032675 -
Trre13g04055 1023 Gene3D Ribonuclease Inhibitor 384 626 IPR032675 -
Trre13g04055 1023 Gene3D Phosphorylase Kinase; domain 1 699 789 - -
Trre13g04055 1023 MobiDBLite consensus disorder prediction 995 1023 - -
Trre13g04055 1023 ProSiteProfiles Protein kinase domain profile. 707 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04055 1023 SMART serkin_6 707 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04055 1023 SUPERFAMILY L domain-like 56 351 - -
Trre13g04055 1023 FunFam MDIS1-interacting receptor like kinase 1 794 1004 - -
Trre13g04055 1023 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Trre13g04055 1023 SMART LRR_typ_2 506 529 IPR003591 -
Trre13g04055 1023 SMART LRR_typ_2 337 361 IPR003591 -
Trre13g04055 1023 SMART LRR_typ_2 433 457 IPR003591 -
Trre13g04055 1023 SMART LRR_typ_2 289 313 IPR003591 -
Trre13g04055 1023 SMART LRR_typ_2 241 265 IPR003591 -
Trre13g04055 1023 SMART LRR_typ_2 193 217 IPR003591 -
Trre13g04055 1023 SMART LRR_typ_2 553 577 IPR003591 -
Trre13g04055 1023 Gene3D Ribonuclease Inhibitor 257 383 IPR032675 -
Trre13g04055 1023 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Trre13g04055 1023 FunFam MDIS1-interacting receptor like kinase 1 707 793 - -
Trre13g04055 1023 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 364 626 - -
Trre13g04055 1023 Pfam Protein kinase domain 709 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04055 1023 Pfam Leucine rich repeat 460 518 IPR001611 GO:0005515
Trre13g04055 1023 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515
Trre13g04055 1023 Pfam Leucine rich repeat 171 229 IPR001611 GO:0005515
Trre13g04055 1023 ProSitePatterns Protein kinases ATP-binding region signature. 713 737 IPR017441 GO:0005524
Trre13g04055 1023 ProSiteProfiles Leucine-rich repeat profile. 291 313 IPR001611 GO:0005515
Trre13g04055 1023 SUPERFAMILY RNI-like 256 604 - -
Trre13g04055 1023 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 181 281 - -
Trre13g04055 1023 PRINTS Leucine-rich repeat signature 508 521 - -
Trre13g04055 1023 PRINTS Leucine-rich repeat signature 553 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04055 Trre-Chr13 48466691 48470068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04055 11 1023 Receptor kinase-like Gene Family AT1G08590 58.357 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g04055 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04055 - - gmx:100811284 1633.62