Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04047 ATGCTGCCTCCGGTTGAAGTGAACGAGAGAATTGAGAATGAGAAATTCTCTATCGAGGAAGCGGCGCCAACAACGATTGCTACACACACTAAAACTATTGGAATAATTCACCCTCCTCCAGACATTAGAACCATTATTGACAAAACCTCTCAGTTCGTTAATAAAGAAGGTCTTGAATTTGAAAAGAAGATTATCGTTAATAATGCACATAATGGTAAGTTTAATTTCCTTAATTCATCACATCCATATCATGCCTATTATCAGCACAGGTTTCGTGTTCAGAATAGTAATGATGTTGAGTTCCGTGTTCAGGATAGTAACGATGTTGAGAAGCCTGATGCGAAGCCTGATGTGAGGAAAGTACTTGATCCCCCTGAAGCTGAGCAGTATACAGTTAGGCTTCCTGAAGGAATTACAGGCGAAGAGGTCGATATAATAAAGCTTACAGCACAGTTTGTGGCTCCAAATGGGAAATCCTTTTTGACTGAATTGACAAGTAGGGAAATTAATAATCCCCAGTTTCATTTCATGAAACCAACACACAGCATGTTTACTTTTTTTACTTCCCTTGCAGATGCATATTCAAAGGTTTTGACTGGAAAGCTGAAGAAGAGTGTTCCTGACATGACTACCGTGCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAGCGTTCTCAAGAGCAAGCTAGGCAAAAGGCTGAAGATGAGATAGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGCGGTTGAATCAATAGATTTTGCTGACGATGAGGATGAAGAATTGCCTCCTCCAATGACGCTTGAGGAGGTTATAATGAGAAGAAGCAAGATGACACCCATGGAAGAAGATACCGTTGAGCCAGGAAAGGAAGTAGAAATGGAAATGGACGAGGAAGAGGCCCAACTTGTTGAAGAGGGAATGAGAGCTGCTAGTTTGGAAGACAATGATGATGGGAGAAGGAATGAAGTCAGGGTTACCGAGGACTCTGAACCACCGATGAAGATTGTGAAGAACTGGAAAAGACCAGAGGAGAGGCTTCCTGCAGATAGAGATTCAACCAAGTTTGTGGTTTCTCCTATCACTGGCCAACTGATTCCTATTAGTGAAATGTCAGAACATATGCGGATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGAGAAACCACTCTGGCACAGGATGATGAAATCTCAAAAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTTGGTACTACAGAGAAAGAGGTTTCCAATGCTGTGAACGCTGAAATTGAGAAAAATGATGAACAACCTAAGCAGGCTTTGAATCTACCTCGTGGTCCTATGCATACCATGCAGTATTCTAATCCTAATAGTGGCGGCCTTCCAATGCCTCCACCAAGACCACCAGGCATGCACATGATGCAATCTCTCAGGCCAGCGCCCCCTCCTCCAATGCAAATGTCTGCTGGACACCATTCCATGATAGGTGGTCAACCGCCCCGAATGCATCCATCAATTCCAATGAATAATCAAGGAATTCCCATACCACCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCCTTATGTTCCGCTCTCTCATCCACCACCAGGGATGCCTTTGATGCATCCACCGCCGCCGCCACCTGAGGAAGCTCTTCCCCCGCTCCCAGAGGAACCAGAGCCAAAGAGGCAGAAGCATGATGATTCTGCTTTGATCCCCAAGGATAAATTTCTGGCTCAACATCCGGTATGTAGAGTTTGGTTGAGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTCAAGGGACAAGTTCTCGAAATAACTGTACAATCTCTATCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCGGGCTTTCTCAAGGATAATATGTCACTTGCACATTACAATATTAGTGGAGGAGAAACACTCTCCCTAACCCTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2061 0.4391 MLPPVEVNERIENEKFSIEEAAPTTIATHTKTIGIIHPPPDIRTIIDKTSQFVNKEGLEFEKKIIVNNAHNGKFNFLNSSHPYHAYYQHRFRVQNSNDVEFRVQDSNDVEKPDAKPDVRKVLDPPEAEQYTVRLPEGITGEEVDIIKLTAQFVAPNGKSFLTELTSREINNPQFHFMKPTHSMFTFFTSLADAYSKVLTGKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVAVESIDFADDEDEELPPPMTLEEVIMRRSKMTPMEEDTVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDDGRRNEVRVTEDSEPPMKIVKNWKRPEERLPADRDSTKFVVSPITGQLIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEKEVSNAVNAEIEKNDEQPKQALNLPRGPMHTMQYSNPNSGGLPMPPPRPPGMHMMQSLRPAPPPPMQMSAGHHSMIGGQPPRMHPSIPMNNQGIPIPPPPGSQFTPVPRPYVPLSHPPPGMPLMHPPPPPPEEALPPLPEEPEPKRQKHDDSALIPKDKFLAQHPVCRVWLSVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNISGGETLSLTLRERGGRKR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04047 686 MobiDBLite consensus disorder prediction 456 485 - -
Trre13g04047 686 FunFam Splicing factor 3A subunit 1 29 99 - -
Trre13g04047 686 FunFam Splicing factor 3a, subunit 1 138 196 - -
Trre13g04047 686 SUPERFAMILY Surp module (SWAP domain) 122 195 IPR035967 GO:0003723|GO:0006396
Trre13g04047 686 SMART ubq_7 607 679 IPR000626 GO:0005515
Trre13g04047 686 Pfam Surp module 144 194 IPR000061 GO:0003723|GO:0006396
Trre13g04047 686 Pfam Surp module 43 90 IPR000061 GO:0003723|GO:0006396
Trre13g04047 686 Coils Coil 223 243 - -
Trre13g04047 686 Gene3D - 574 685 - -
Trre13g04047 686 Pfam Pre-mRNA splicing factor PRP21 like protein 208 421 IPR022030 -
Trre13g04047 686 SUPERFAMILY Surp module (SWAP domain) 21 91 IPR035967 GO:0003723|GO:0006396
Trre13g04047 686 MobiDBLite consensus disorder prediction 545 568 - -
Trre13g04047 686 CDD Ubl_SF3a120 602 679 IPR035563 -
Trre13g04047 686 ProSiteProfiles SURP motif repeat profile. 45 87 IPR000061 GO:0003723|GO:0006396
Trre13g04047 686 Coils Coil 302 322 - -
Trre13g04047 686 ProSiteProfiles Ubiquitin domain profile. 627 683 IPR000626 GO:0005515
Trre13g04047 686 MobiDBLite consensus disorder prediction 471 485 - -
Trre13g04047 686 SUPERFAMILY Ubiquitin-like 581 684 IPR029071 -
Trre13g04047 686 ProSiteProfiles SURP motif repeat profile. 145 187 IPR000061 GO:0003723|GO:0006396
Trre13g04047 686 SMART surpneu2 43 96 IPR000061 GO:0003723|GO:0006396
Trre13g04047 686 SMART surpneu2 143 196 IPR000061 GO:0003723|GO:0006396
Trre13g04047 686 FunFam Probable splicing factor 3A subunit 1 574 685 - -
Trre13g04047 686 Gene3D Surp module 138 196 IPR035967 GO:0003723|GO:0006396
Trre13g04047 686 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 22 636 IPR045146 GO:0003723|GO:0045292
Trre13g04047 686 Gene3D Surp module 29 98 IPR035967 GO:0003723|GO:0006396
Trre13g04047 686 MobiDBLite consensus disorder prediction 545 581 - -
Trre13g04047 686 Pfam Ubiquitin family 614 681 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04047 Trre-Chr13 48435942 48438002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04047 614 683 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 1.67e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04047 K12825 - gmx:100797261 923.694