Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04037 ATGAAGAGCATTGGGATTGAGGAACATAAAGTGAAACCTGTATTGAAGAAACTACTTAGATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGGTTCTTGCTGATGCAATTTTCGATGCGGATGAAAACCAGGAGTTGGAGCCGGAGCCAGATCCGGAAAAGAAAAACAAGAAGAAGGTGGATGTAGACGATGAAGCTCCTACGCACGAAGAGCCAGTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGTCAAGACGGTCAACCATCACGCCTGCTGTCTAATGGTGGTCCAAGTTCAGCCGCCTTTCCATTGAAAACACCTAAATCGGAACCTGGCACAGTATCTGGAAGTAGTTCCAGACTGCAGCCTCAAAGCACATCAGTTTTATCCAATGGAAATGGCGTTGTTGACAAGGGAAAGAAGCCTCTATCACCTGAAGATACTCTAAGAGGGAGAAGATCTATATCTGACAGAAATCCACCTCCAGTGGTGTTTAAAGAACCAGGAACCTCTCCGCTGTCAAAAAGCAAAACGCCTCATTCTTACCCTTTTGTCACCCCCAAGCCCGAGCCTTTTGATGAAGAACCAGATTATTTGGCTCCCATTTCAATGATTCTTCCTGAACCAAGTGTTAGAGAATCTTCGTCGAAGAATGATACCGCTGGAGAGCAAGATGGCAACAACACTGTGGCATCACAATGCAGAAACGAAAATGTTGAAGGTGAAGATATTCTTCCTTCCTCAAATGAAGAAGCGAATTCTAATGCTGAGCTAGCCTCATCATCTACGGGAGAGGATGCATCTGTAAAGGTAATACCAACCGTTGGTCTTTCAAAAGAATCCGAGGCAAATGGCACACTGATTGACGGAGGAAATAAAGATTCCGCAATACCTTCTTGCGCTGCAAATGGATCAACCTCTGTTAAGTCTTCTTCCGCCTTGGTTGCACCCGAAGTTCCTGTTTCTCCACCCTGCCCAAGTGGTCCGGATGATGCTGTACTAGTTTCCAAGAATGATTTCTCGGAAAGTGGTGATGGGGAGGAGCCAAGGGAACCTATGCCTCATAATTCATGTAATGTAATGAATGCTCCAAAGCATCATCATACAAATGATGATACAAGGGCTGTTTGTGTTACCACTGACCTAACAAAGGGAGAAGAAAAAGTGAAAATTTCATGGGTGAACAATTCCAACAGTGATATTCCACCTCCGTTTCACTACATACCCCGAAACTTGGTGTTCCGAGATGCATATGTTAATATTTCTTTATCCCGTATTGGGAGTGAAGATTGTTGTTCTACCTGTTTTGGCAATTGTGTCTTATCACCTAAACCATGTTCTTGTGCAAATAAAACTGGAGGGGATTTTGCCTACACTGCACAAGGTGTACTAAAGGAAAAGTTCCTGGAAGAGTGTATTGCCATCAGCCGTGATCCTCAAAATTATTCCTATTGCAAAGAATGCCCACTGGAAATGTCAAAGAATGATGGCTGTTTAGAACCATGCAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGCGGGAAACATTGTGGCAATCGGATTGTCCAGCGTGGAATATCTCGCAACTTGCAGGTGTTTTTAACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTGTATGCGAGTTTGTTGGAGAAATTTTGACCGTCGAAGAATTGCATGAGAGGAACTTGAAATATCCCAAAACATCATATGGAAATGCTGCAAGGTTTATTAATCACAGATGTTTAGATGCAAACTTGATTGAGATCCCGGTTGAAGTTGAGGGTCCATCTCATCACTATTATCATTTTGCCTTCTTCACCTCCAGAGAAATCGCAGCACATGAAGAGTTGACCTGGGACTATGGCATCGACTTTGATGACGATGATCAGCCTGTCGAGCTGTTCAGGTGCAAATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGAACCATTAGATCCTAA 2034 0.4312 MKSIGIEEHKVKPVLKKLLRLYDKNWELIEEENYRVLADAIFDADENQELEPEPDPEKKNKKKVDVDDEAPTHEEPVRPLKRLRLRGQDGQPSRLLSNGGPSSAAFPLKTPKSEPGTVSGSSSRLQPQSTSVLSNGNGVVDKGKKPLSPEDTLRGRRSISDRNPPPVVFKEPGTSPLSKSKTPHSYPFVTPKPEPFDEEPDYLAPISMILPEPSVRESSSKNDTAGEQDGNNTVASQCRNENVEGEDILPSSNEEANSNAELASSSTGEDASVKVIPTVGLSKESEANGTLIDGGNKDSAIPSCAANGSTSVKSSSALVAPEVPVSPPCPSGPDDAVLVSKNDFSESGDGEEPREPMPHNSCNVMNAPKHHHTNDDTRAVCVTTDLTKGEEKVKISWVNNSNSDIPPPFHYIPRNLVFRDAYVNISLSRIGSEDCCSTCFGNCVLSPKPCSCANKTGGDFAYTAQGVLKEKFLEECIAISRDPQNYSYCKECPLEMSKNDGCLEPCKGHLKRKFIKECWSKCGCGKHCGNRIVQRGISRNLQVFLTSEGKGWGLRTLEDLPKGAFVCEFVGEILTVEELHERNLKYPKTSYGNAARFINHRCLDANLIEIPVEVEGPSHHYYHFAFFTSREIAAHEELTWDYGIDFDDDDQPVELFRCKCGSKFCRNMKRSNRTIRS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04037 677 Pfam Pre-SET motif 387 531 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g04037 677 ProSiteProfiles SET domain profile. 539 643 IPR001214 GO:0005515
Trre13g04037 677 Gene3D - 1 47 IPR043017 -
Trre13g04037 677 SMART set_7 539 649 IPR001214 GO:0005515
Trre13g04037 677 SUPERFAMILY SET domain 393 666 IPR046341 -
Trre13g04037 677 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 586 - -
Trre13g04037 677 MobiDBLite consensus disorder prediction 144 158 - -
Trre13g04037 677 Pfam Ubiquitin-binding WIYLD domain 1 47 IPR018848 -
Trre13g04037 677 MobiDBLite consensus disorder prediction 45 274 - -
Trre13g04037 677 Gene3D SET domain 361 653 IPR046341 -
Trre13g04037 677 MobiDBLite consensus disorder prediction 213 240 - -
Trre13g04037 677 MobiDBLite consensus disorder prediction 319 361 - -
Trre13g04037 677 ProSiteProfiles Pre-SET domain profile. 442 536 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g04037 677 Pfam SET domain 589 643 IPR001214 GO:0005515
Trre13g04037 677 MobiDBLite consensus disorder prediction 251 272 - -
Trre13g04037 677 CDD SET_SETDB-like 407 643 - -
Trre13g04037 677 SMART preset_2 383 523 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g04037 677 MobiDBLite consensus disorder prediction 114 137 - -
Trre13g04037 677 MobiDBLite consensus disorder prediction 52 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04037 Trre-Chr13 48353879 48359389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04037 377 666 Su(var)3-9 homologs AT1G73100 28.571 9.12e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g04037 Pre-SET 5.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04037 - - gmx:100809678 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04037 13 48353879 48359389 Trre13g04037 13 48353879 48359389 ECH
Trre1g02788 1 23063780 23069112 Trre13g04037 13 48353879 48359389 PCT