Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04035 ATGAGCAAGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACTTTGTTTCGAAGGAAGAAATTAAAGTTTTGATTGAACCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGCAAATGTTGATCGCACTCAACAAAAGCTTAATGTTCGTGACTTGGACTCAAAAACTTTGTATTCGGCATTGCAAGTTCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGATGAGGGCCTAACAGAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACCAGAGAAATGCTGCTCAACTATTTTGAGGTGCATGGTGATATAGAAGAATGTGTACTTGTATATCAATATAACAATGATTTAAATATATCAAGTCACGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGGAGATGGTCAGCCGTCTATTCCTGCAAGAGTTGCACCGAATGCTAATGCACTGAATGCTAATGCACGTCCTTATCCAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATGCACCGAATGCTGCACCTCCTTATCCATACCTGCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGATGTACCACCTTATCCATACCCCCAAGCAGGTGCACGATATGCCGTATCTCCTTATCCATACCTCCGAACTACTACACTATATGCTGCATCTCCTTATCCAACTCTTCTCATGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGAATGCACTACTTTACTTCTTTCTGTACTTTAA 1095 0.4046 MSKKKEMEDLEKNSGDFVSKEEIKVLIEPLSKPQLVDLLSQLGSKYPSIAQEIESFANVDRTQQKLNVRDLDSKTLYSALQVHGEIEEGNVMLDRDTGKSAQSALNAPSNFIDGVSKLSDEGLTETTSSATDLSQRNLYIGNLSRQVTREMLLNYFEVHGDIEECVLVYQYNNDLNISSHVTYKTAEAAKNAIKDLDQSTLGGRTITVKYDLHNVGDGQPSIPARVAPNANALNANARPYPMEALSMTPEYVAPNANAPNAAPPYPYLQTDAPPFPYPQTGAPYAASPYPYPQTDASHDVPPYPYPQAGARYAVSPYPYLRTTTLYAASPYPTLLMHLLLSIIIILSIIIIPTHECTTLLLSVL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04035 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 207 IPR000504 GO:0003723
Trre13g04035 364 CDD RRM_SF 138 209 - -
Trre13g04035 364 Gene3D - 114 215 IPR012677 -
Trre13g04035 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 213 IPR000504 GO:0003723
Trre13g04035 364 SUPERFAMILY RNA-binding domain, RBD 130 214 IPR035979 GO:0003676
Trre13g04035 364 SMART rrm1_1 137 209 IPR000504 GO:0003723
Trre13g04035 364 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 72 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04035 Trre-Chr13 48346826 48348534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04035 20 100 C2H2 Transcription Factor Family AT2G19380 35.294 3.60e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04035 K12741 - gmx:100802911 222.631