Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04030 ATGAGCAAGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACTTTGTTTCGAAGGAAGAAATTAAAGTTTTGATTGAACCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGCAAATGTTGATCGCACTCAACAAAAGCTTAATGTTCCATTGCAAGTTCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGATGAGGGCCTCACAAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACCAGAGAAATGCTGCTCAACTATTTTGAGGTGCATGGTGATATAGAAGAATGTGTACTTGTATATCAATATAACAATGATTTAAATATATCAAGTCACGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGGAGGTGGTCAGTCGTCTGTTCCTACAAGAGTTGCACCGAATGCTAATGCACTGAATGCTAATGCACGTCCTTATCCAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATGCACCGAATGCTGCACCTCCTTATCCATACCTGCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGATGTACCACCTTATCCATACCCCCAAGCAGGTGCACGATATGCCGTATCTCCTTATCCATACCTCCGAACTACTACACTATATGCTGCATCTCCTTATCCAACTCTTCTCATGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGAATGCACTACTTTACTTCTTTCTGTACTTTAA 1065 0.4047 MSKKKEMEDLEKNSGDFVSKEEIKVLIEPLSKPQLVDLLSQLGSKYPSIAQEIESFANVDRTQQKLNVPLQVHGEIEEGNVMLDRDTGKSAQSALNAPSNFIDGVSKLSDEGLTKTTSSATDLSQRNLYIGNLSRQVTREMLLNYFEVHGDIEECVLVYQYNNDLNISSHVTYKTAEAAKNAIKDLDQSTLGGRTITVKYDLHNVGGGQSSVPTRVAPNANALNANARPYPMEALSMTPEYVAPNANAPNAAPPYPYLQTDAPPFPYPQTGAPYAASPYPYPQTDASHDVPPYPYPQAGARYAVSPYPYLRTTTLYAASPYPTLLMHLLLSIIIILSIIIIPTHECTTLLLSVL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04030 354 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 65 303 - -
Trre13g04030 354 CDD RRM_SF 128 199 - -
Trre13g04030 354 Gene3D - 104 205 IPR012677 -
Trre13g04030 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 203 IPR000504 GO:0003723
Trre13g04030 354 SMART rrm1_1 127 199 IPR000504 GO:0003723
Trre13g04030 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 197 IPR000504 GO:0003723
Trre13g04030 354 SUPERFAMILY RNA-binding domain, RBD 119 205 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04030 Trre-Chr13 48331431 48333138 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04030 20 90 C2H2 Transcription Factor Family AT2G19380 36.047 7.57e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04030 K12741 - gmx:100802911 210.69