Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04029 ATGTCGAAGAGAGGTCGTGGTGGCTCTGCTGGTAACAAATTCAGGATGTCACTTGGTCTGCCGGTGGCAGCGACGGTGAACTGTGCTGATAACACCGGAGCTAAAAACCTTTACACCATTGGTGTCAAAGGTGTTGGAGCAAGGTTGAACCGTTTGCCATCTGCTTGTCTTGGTGATATGGTTATGGCTACTGTCAAGAAGGGAAAACCTGAACTCAGGAAGAAGGTTTTGCCAGCGGTGATCGTCCGTCAGCGTAAACAATGGCGCCGAAAAGACGGCGTTTTCATGTATTTTGAAGATAATGCTGGTGTCATTGTGAATCCTAAAGGTGAAATGAAAGGGTCTGCTATTACTGGTCCAATTGGGAAGGAGTGTGCTGATCTGTGGCCTAGGATTGCAAGTGCTGCTAATGCTATCGTTTAA 423 0.4728 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYTIGVKGVGARLNRLPSACLGDMVMATVKKGKPELRKKVLPAVIVRQRKQWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04029 140 FunFam 60S ribosomal protein L23 1 140 - -
Trre13g04029 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04029 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre13g04029 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre13g04029 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04029 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04029 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 139 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04029 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04029 Trre-Chr13 48328917 48330052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04029 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 92.857 5.56e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04029 K02894 - egt:105950222 269.626