Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04020 ATGTCGAAGAGAGGTCGCGGTGGATCCGCGGGTAACAAGTTCAGGATGTCACTTGGTCTACCAGTGGCGGCGACGGTGAACTGCGCCGACAATACCGGAGCTAAGAATCTCTACATCATTTCCGTGAAAGGTATTAAGGGAAGATTGAACCGTTTGCCTTCAGCTTGTGTTGGTGATATGGTGATGGCTACTGTCAAGAAAGGAAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATCGTTCGTCAGCGTAAACCATGGCGCCGAAAGGACGGTGTTTTCATGTATTTCGAAGACAATGCTGGAGTCATTGTTAATCCCAAAGGAGAAATGAAAGGTTCTGCTATTACTGGTCCAATTGGGAAGGAGTGTGCTGATCTATGGCCTAGGATTGCAAGTGCTGCTAATGCTATTGTTTAA 423 0.4752 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04020 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04020 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre13g04020 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre13g04020 140 FunFam 60S ribosomal protein L23 1 140 - -
Trre13g04020 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 139 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04020 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04020 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre13g04020 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04020 Trre-Chr13 48302009 48303024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04020 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 98.571 3.01e-99 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04020 K02894 - fve:101313597 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04020 13 48302009 48303024 Trre13g04020 13 48302009 48303024 ECH
Trre13g04020 13 48302009 48303024 Trre1g02790 1 23072477 23074396 PCT