Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04018 ATGGAAGCTCGTCATGCTTTTTCAATTGAAAGATCAAGTTCCAATCAGCTGAATAACATAGGGATGTCGGGAGCACTTCCTTCATCGTTGTCTGTCCATCCGACACCTCTAGAAGAGACATACCCCAGATTTTCTGATTCACAGCCAGCTTTTGTAGAAAAAGATCCTCAGACAAGAACTTTTAATCATTCAAATCATATAAGTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCAACAGACCTTCATCACTCATCCCTTTCACCTCATGAAAAACACTCTAGAAATGCTCATTTTATTTCACAGTCAATGAGCAACGTGGCTTCGGTGCCATTACCGTATTCTTCAAATAATGGTCCGCTACCTTCTACAACATCAACACATTATTCCAATGGAAGCAGTGCTTCATGGCATGCAGATTCCTTGCCTAGCTTTCTTGAATTCTCTGTTAATGCCTCAATTGATAATAACCAAGTAGAGAGCAGTGCCTGCAATATTATGGCTACTGAGGAGTTTCCTAAGCGAAATGATTGGCAAGAGTGGGCTGACCAGCTAATCAGTGATGATGATACTTTGACTTCTAATTGGAACGATCTTCTTGCTGATAACATTCAAGATCTTGATCCAAAGGCGGTGGATCCCATTTCAAAGTCATCTTCACAATTTTCGGCAGGACACCAATCGCAAGGCCACCAACAACTTCCAGCTCTATCTGGAGAAAACCATGTTGGTGTCGCTCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGTTGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCACCCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCTTCTGAAGGAGCTACGGATAAAAGACTAAGCCCCATTGAAGATATTTCATCTCTAGATTTGAAAACTGGTATTGAGATCACGGAAGCTCTGCGACTGCAGATGGAGGTCCAGAAACGGTTGCACGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAGCAAGGCAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAATCTGGTGTTGAACCATTTAAAGCATCATCATCAGCCATTGAGATTCCATCTGAGGTGTCTTCTGACACCACAAAAAATTCTCTTACTAAAAATGAATCGGAAGCATCCAAAAAGGATCGTTGCAGGTCAGGACCTGATCAAGCTAATGGTAGTACCACAGCTGAGGAAAGCTCACTGCAGGATACCTCCAAAGCCCAAGCTTCTGATGACCTTAAGCAAAATGATAACGAAGATAGCGCTCAACCCCCTAAGCGTCCAAGAACAGATGAGTAA 1452 0.4318 MEARHAFSIERSSSNQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPAFVEKDPQTRTFNHSNHISSSGAVGHMFSSSPGYSTDLHHSSLSPHEKHSRNAHFISQSMSNVASVPLPYSSNNGPLPSTTSTHYSNGSSASWHADSLPSFLEFSVNASIDNNQVESSACNIMATEEFPKRNDWQEWADQLISDDDTLTSNWNDLLADNIQDLDPKAVDPISKSSSQFSAGHQSQGHQQLPALSGENHVGVAPSSSANSAPAKPRMRWTPELHEAFVEAVTQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGATDKRLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIEIPSEVSSDTTKNSLTKNESEASKKDRCRSGPDQANGSTTAEESSLQDTSKAQASDDLKQNDNEDSAQPPKRPRTDE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04018 483 MobiDBLite consensus disorder prediction 55 89 - -
Trre13g04018 483 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Trre13g04018 483 Gene3D - 261 320 - -
Trre13g04018 483 Coils Coil 350 370 - -
Trre13g04018 483 MobiDBLite consensus disorder prediction 30 49 - -
Trre13g04018 483 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 233 468 IPR044848 GO:0003700
Trre13g04018 483 MobiDBLite consensus disorder prediction 461 483 - -
Trre13g04018 483 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Trre13g04018 483 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Trre13g04018 483 MobiDBLite consensus disorder prediction 402 483 - -
Trre13g04018 483 MobiDBLite consensus disorder prediction 406 423 - -
Trre13g04018 483 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Trre13g04018 483 MobiDBLite consensus disorder prediction 438 460 - -
Trre13g04018 483 MobiDBLite consensus disorder prediction 218 238 - -
Trre13g04018 483 MobiDBLite consensus disorder prediction 55 100 - -
Trre13g04018 483 MobiDBLite consensus disorder prediction 219 238 - -
Trre13g04018 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Trre13g04018 483 FunFam Myb family transcription factor 261 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04018 Trre-Chr13 48286072 48291172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04018 1 436 G2-like Transcription Factor Family AT4G28610 47.964 1.48e-107 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g04018 Myb_DNA-binding 4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04018 - - gmx:100810560 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04018 13 48286072 48291172 Trre13g04018 13 48286072 48291172 ECH
Trre13g04018 13 48286072 48291172 Trre1g03806 1 37056449 37059377 ECH
Trre13g04018 13 48286072 48291172 Trre1g03806 1 37056449 37059377 PCT