Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04017 ATGAACATTCACATCGATTCTTTGACGTCAAAAGAGAAAAAACTAGCGTCTTTGCTGCATAAGACAAGACAAGATGCAAAACAACTAATTGTTTCAAAGAACTTGGATATGTATGGGATGAAAGAGTACATTATATTCTATCTCAAATCTCGACAAGAGAATTTTGCTCGTTTAAAGGTAGTGAATTTTATTGATCAGAAAAATTTGATTCGGGTCCTAGAGATTATCATAACTTTTTGTGAACTAATTGATCGTCGTCTTCCTTCAATTGATCAATCACAAAGGGAAGTTCCCCCAGACATGAAGGAAGCTATAGCTACTTTATGTTTTATTGGACCAAGGTATGGTGAACTTCCGATTCTGGTGAAGGTTCGGTCACACTTTTCTTGCAAATATGGGGAAGAATATATAGTTAATCTCACCAAGTGCAAGCCAGATTCTTGTGTCAATAAGAAGATAATGAAGTTGTTGTTACTTCCGAGTCCAACAAAAGATAAGCAAAACAAAGTTCTAATTGACATTGCTAAACAAAGAAACTTCAAATGGTATCCGAAGAACAAATGTACCCCGGACGTTGTTGATGAAGACACAACGACTTCTACTTCTCGAAAATCAATGTCACATGACACCAAATGCAAGGAGATTGTGCCAATTGGAATAAAGAATGAAACTAGAATAAGGATGAGAACTAAAAAAAAGAGAGGAATAGTTGAAAAAGCAGGAGAGTCAATTGTAACTAGGCCTACTGCTGGACTTCTTAGGCCAATTGTTCATGGACAAACTCAGAAATACAACATGAAACTTAGGGCTGGTAAAGGATTTTCTCTTGAGGAGTTGAAGGCTGCTGGCATTCCCAAAAAGCTTGCACCAACTATTAGCATTTCTGTTGATCATCGCAGAAAGAACAGATCCTTGGAGGGTCTGCAAACCAACGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGACTGTCTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGACTCTACTCTTGAGGAACTTGCAAATGCTACACAGGTTCAAGGATCATACTTGCCTATCGCGAGGGAGAAACCAACAGTAGAGCTTGTTAAGGTTACAGATGAAATGAAGGCATTTAAAGCTTACTACAAGCTTCACCTTGAACGAACAAACAAACGGCATTTGGGGAAAGCTCACTGCCGGATACCTCCAAAGCCCAAGTTTCTGATGATCTTAAGCAAAATGACAACGAAGATAGCGCTCAACCCCCTAAGCGTCCAAGAACAGATGAGTAAACCTTATGCTACTGAATCAGCATTGAGAACTGACAAGACAATACTGATTCATTTGAGATATAATTTTAGCAAGGAAGACTTGATTGATCAATGCCTAGAGCTCTATAACTTAACGTATTCATCATGTCATGTTGTGTTGAATGAGGACTTCTATGTTTACCTTTCATTTAGTTTTTAG 1458 0.3882 MNIHIDSLTSKEKKLASLLHKTRQDAKQLIVSKNLDMYGMKEYIIFYLKSRQENFARLKVVNFIDQKNLIRVLEIIITFCELIDRRLPSIDQSQREVPPDMKEAIATLCFIGPRYGELPILVKVRSHFSCKYGEEYIVNLTKCKPDSCVNKKIMKLLLLPSPTKDKQNKVLIDIAKQRNFKWYPKNKCTPDVVDEDTTTSTSRKSMSHDTKCKEIVPIGIKNETRIRMRTKKKRGIVEKAGESIVTRPTAGLLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTISISVDHRRKNRSLEGLQTNVQRLKTYKAKLTVFPRRARKVKAGDSTLEELANATQVQGSYLPIAREKPTVELVKVTDEMKAFKAYYKLHLERTNKRHLGKAHCRIPPKPKFLMILSKMTTKIALNPLSVQEQMSKPYATESALRTDKTILIHLRYNFSKEDLIDQCLELYNLTYSSCHVVLNEDFYVYLSFSF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04017 485 Hamap 50S ribosomal protein L13e [rpl13e]. 244 327 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre13g04017 485 Gene3D - 366 394 - -
Trre13g04017 485 ProSitePatterns Ribosomal protein L13e signature. 269 283 IPR018256 GO:0003735|GO:0005840|GO:0006412
Trre13g04017 485 Pfam Regulator of Vps4 activity in the MVB pathway 40 179 IPR005061 GO:0015031
Trre13g04017 485 Pfam Ribosomal protein L13e 229 384 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre13g04017 485 Gene3D - 7 191 IPR042277 -
Trre13g04017 485 PANTHER 60S RIBOSOMAL PROTEIN L13 232 394 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04017 Trre-Chr13 48279872 48284277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04017 229 391 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 76.687 1.25e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04017 K02873 - gmx:100805957 259.996