Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04016 ATGCAAGAAAGACATTTTACATCGGGTAAAATGAACATTCACATCGATTCTTTGACGTCAAAAGAGAAAAAACTAGCGTCTTTGCTGCATAAGACAAGACAAGATGCAAAACAACTAATTGTTTCAAAGAACTTGGATATGTATGGGATGAAAGAGTACATTATATTCTATCTCAAATCTCGACAAGAGAATTTTGCTCGTTTAAAGGTAGTGAATTTTATTGATCAGAAAAATTTGATTCGGGTCCTAGAGATTATCATAACTTTTTGTGAACTAATTGATCGTCGTCTTCCTTCAATTGATCAATCACAAAGGGAAGTTCCCCCAGACATGAAGGAAGCTATAGCTACTTTATGTTTTATTGGACCAAGGTATGGTGAACTTCCGATTCTGGTGAAGGTTCGGTCACACTTTTCTTGCAAATATGGGGAAGAATATATAGTTAATCTCACCAAGTGCAAGCCAGATTCTTGTGTCAATAAGAAGATAATGAAGTTGTTGTTACTTCCGAGTCCAACAAAAGATAAGCAAAACAAAGTTCTAATTGACATTGCTAAACAAAGAAACTTCAAATGGTATCCGAAGAACAAATGTACCCCGGACGTTGTTGATGAAGACACAACGACTTCTACTTCTCGAAAATCAATGTCACATGACACCAAATGCAAGGAGATTGTGCCAATTGGAATAAAGAATGAAACTAGAATAAGGATGAGAACTAAAAAAAAGAGAGGAATAGTTGAAAAAGCAGGAGAGTCAATTGTAACTAGGCCTACTGCTGGACTTCTTAGGCCAATTGTTCATGGACAAACTCAGAAATACAACATGAAACTTAGGGCTGGTAAAGGATTTTCTCTTGAGGAGTTGAAGGCTGCTGGCATTCCCAAAAAGCTTGCACCAACTATTAGCATTTCTGTTGATCATCGCAGAAAGAACAGATCCTTGGAGGGTCTGCAAACCAACGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGACTGTCTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGACTCTACTCTTGAGGAACTTGCAAATGCTACACAGGTTCAAGGATCATACTTGCCTATCGCGAGGGAGAAACCAACAGTAGAGCTTGTTAAGGTTACAGATGAAATGAAGGCATTTAAAGCTTACTACAAGCTTCACCTTGAACGAACAAACAAACGGCATTTGGGGAAAGCTCACTGCCGGATACCTCCAAAGCCCAAGTTTCTGATGATCTTAAGCAAAATGACAACGAAGATAGCGCTCAACCCCCTAAGCGTCCAAGAACAGATGAGTAAACCTTATGCTACTGAATCAGCATTGAGAACTGACAAGACAATACTGATTCATTTGAGATATAATTTTAGCAAGGAAGACTTGATTGATCAATGCCTAGAGCTCTATAACTTAACGTATTCATCATGTCATGTTGTGTTGAATGAGGACTTCTATGTTTACCTTTCATTTAGTTTTTAG 1488 0.3871 MQERHFTSGKMNIHIDSLTSKEKKLASLLHKTRQDAKQLIVSKNLDMYGMKEYIIFYLKSRQENFARLKVVNFIDQKNLIRVLEIIITFCELIDRRLPSIDQSQREVPPDMKEAIATLCFIGPRYGELPILVKVRSHFSCKYGEEYIVNLTKCKPDSCVNKKIMKLLLLPSPTKDKQNKVLIDIAKQRNFKWYPKNKCTPDVVDEDTTTSTSRKSMSHDTKCKEIVPIGIKNETRIRMRTKKKRGIVEKAGESIVTRPTAGLLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTISISVDHRRKNRSLEGLQTNVQRLKTYKAKLTVFPRRARKVKAGDSTLEELANATQVQGSYLPIAREKPTVELVKVTDEMKAFKAYYKLHLERTNKRHLGKAHCRIPPKPKFLMILSKMTTKIALNPLSVQEQMSKPYATESALRTDKTILIHLRYNFSKEDLIDQCLELYNLTYSSCHVVLNEDFYVYLSFSF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04016 495 ProSitePatterns Ribosomal protein L13e signature. 279 293 IPR018256 GO:0003735|GO:0005840|GO:0006412
Trre13g04016 495 Gene3D - 376 404 - -
Trre13g04016 495 Pfam Ribosomal protein L13e 239 394 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre13g04016 495 Gene3D - 17 201 IPR042277 -
Trre13g04016 495 PANTHER 60S RIBOSOMAL PROTEIN L13 242 404 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre13g04016 495 Hamap 50S ribosomal protein L13e [rpl13e]. 254 337 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre13g04016 495 Pfam Regulator of Vps4 activity in the MVB pathway 51 189 IPR005061 GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04016 Trre-Chr13 48279872 48284307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04016 239 401 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 76.687 2.13e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04016 K02873 - gmx:100805957 259.996