Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04014 ATGGCAAATATTCAAAAGGCTATTGCTCCTATCTTTTATATACTACTTATATCTTTGCTTCCATTGAAAATCACTTCATCACTAAAAACAGAAGCAGAAGCTCTTGTCAAATGGAAAAACAGTCTATCCTCTCCTCTTCCTTTTCCTTCACCTCTCAACACATGGTCACTCACCAACCATATCAACCTTTGCAATTGGGATGCTGTTGTTTGTGACACCACCAATACAACTATCTTAGAGATAAACTTGTCTAATGCCAATCTCAGTGGAACACTCACTAGCTTGGATTTTGCTTCTCTCCCAAACCTCACCCTCCTCGACCTCGATAACAACAGGTTTAGTGGATCAATACCTTCAACAATTGGCAACCTCTCCAAGCTCACTTTCTTGGACTTGGAAAACAACTTACTCGAAGACGCACTCCCTTCCGAGCTAAGCCGACTAAGGGAACTTCAACATGTTAGTTTTTACAACAACAATTTCAATGGTACCATTCCTTATCAGCTCACTAATCTTCCCAAGGTAAGTTACCTTGAACTTGGAGCAAACTATTTTGTATCTTCCCTCGATTGGTCCCAATATTCAAACATGCCTTCCTTGAATTACCTTGGTTTGGAAGAAAATAGATTCACCGGTGACATTCCGAGTTTCATAGTTGAGTGCAAGAATTTAACATACCTTGACCTCTCTCAGAACAAATGGAATAGTAAAATACCAGAACCCATTTATAGTAATTTGAAAAGGCTTGAATATCTTAACCTCACCAACTGTGGACTAGAAGGAAAACTATCTTCCAACTTGTCTATGCTCTCGAATCTCAAAGAACTCCGTATCGGTAATAACATGTTTAATAGTCCTATTCCAACAGAGATAGGATTGTTATCTAGGCTTCAAATTCTTGAACTGAACAATGTTTCGGCCCACGGAGAAATTCCTTCTTCCATAGGTCAACTAAAGAAGCTAGTGCATCTTGATCTAAGTGCTAACTTTTTTAACTTTAGTGTCCCATATGAGATTGGCCTATGCACAAATCTAACTTTCATGAGCTTAGCTGGAAATAATCTAACAGGTTCTTTGCCTTTATCATTAGCTAATTTAACCAAACTTTCAGAACTAGGATTATCAGAAAATTCCTTTTCTGGTCAAATTTCCGCTTCATTGATCTCTAATTGGACTGAGTTAACTTCTTTGCAAGTCCAAAACAATAGATTAAATGGAACAGTTCCTTCACAGATTGGCTTGTTGAAAAAAATTACACTCCTTTATCTCTACAAAAATGATTTCTCTGGTCCTATTCCTAAAGAGATTGGAAACTTAAAGGAAATGACAGATGTTCCCGGAGACTTTGGAAAGAACAGTCCTTCTTTAACTAATGTCTACCTTTCAAACAATAGTTTCTCAGGAGAACTTCCTTCTGACATGTGCAGTGGCCTCAATCTACTTATTTTGACAGTAAATAACAATAGCTTTTCAGGGCCATTGCCAAACTCCTTGAGAAATTGTTCATCCTTAACAAGAGTTAGGCTTGATGATAACCAGTTCAGCGGAAACATCACAGAAGCATTTGGAGTTCATCCAAATCTTAATTTCATCACACTTAGCAGAAACCGCTTCCATGGCTATCTCTCTTCGGATTGGGGTAAATGTACCAACTTAACTGAGATGGAAATGAGTGGAAACAAACTTTCTGGAAAAATTCCATCTGAGATAAGTAAGCTGAGTAAATTACAATATCTTAGCCTGCACTCCAACGAATTCACCGGAAATATCCCACGTGAAATTGGAAATCTAAGCCTTCTCTACAACTTGAACTTGAGCAGGAACCATTTTTCAGGAGAGATCCCAAAGAGTATTGGAAGATTATCTAAGCTTAACGTTGTTGATTTATCTGATAACAACTTCAAAGGAAGCATTCCAAAAGAGATCGGTAATTGTAATCAGTTGCAAAGTCTTAACTTAAGCCATAACAATCTATCTGGCACGATACCTTATGAACTAGGTAATCTGTTCTACCTCCAATCCTTGTTAGATGTCAGCAGCAACAATCTTTTGGGAGAAATTCCTCAAAATCTTCAAAAGTTAGCATCACTGGAGATCCTTAATGTCTCACACAACAATCTATCTGGAACAATCCCACAATCCTTTTCAAGTATGTTTAGCCTTCAATCTGTGGACTTTTCTTATAACCACTTATCAGGTTTGATCCCAACAGGTGGTGTTTTTCAAAAAGAAACTGCTGAAGCTTTTGCTGGGAATTCAGGTTTGTGTGGTGAGGTAAAAGGATTAGCATGTGCCACAACATTGTCTCAAAAAAATTCTGGAGGGACCAACAAAAAGGTACTTATTGGTGTTACTACATCAGTTGTTGGAGTACTATTTATAGGGATGATTGGTTTTGGAATCCTACTATTTCAAAGAAAAGCCAAAAAACTTAGTGAAGAATCCAAAAGCAATGAAGACAATGATCAATCTATTAGCATGGTATGGGGAAGAGATGCAAAATTCACATTTTCTGATCTTGTGAAAGCAACCAACGACTTCAATGAAAAGTACTGCATTGGAAAAGGAGGATTCGGAAGTGTTTATAAAGCAGAACTTGCTACAGGTCAAATAGTTGCTGTAAAAAGATTCAATATATCTGACTCTGATGACATTCCAAAAGTGAATCAGATGAGCTTCTTGAATGAGATAAGAACACTAACAGGAGTGAGGCACCGGAATATAATAAAGCTTTATGGTTTCTGTTCTAGGAGGACACAAATGTTCCTTGTTTACGAACATGTAGATCGAGGAAGTTTGGGAAAATTGTTGTATGGAAGAGAAGGAAAATTGGAGCTAAGTTGGGGTACAAGGGTAGAAATCCTGCAAGGAATAGCACATGCAATTTCTTACCTTCATAGTGATTGCTCTCCACCAATTGTGCATAGAGATATAACATTGAATAATATACTACTGGATTCAAATTTTGTACCTCATCTTGCAGATTTTGGCACAGCAAAGCTTCTAAGCTCTAACAATTCAACCTGGTCCTCCGTTGCTGGATCTTACGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTGACTGAAAAGTGCGACGTGTATAGTTTTGGCGTGGTGGTGTTAGAGATATTGATGGGAAAACACCCTGGAGAATTCTTGGGTACCTTGTATTCAAACAAGTCTTTAACATTAATGGAAGTGCTTGTGAAGGATATTGTAGACCAAAGGCTTCCACCTCCGACAGACAAATTAGGTGAAACAATAGTGTTCACAATGAGAGTAGCTTTGGCTTGTACGCGAGCTGCTCCTGAGTCTCGACCCATGATGCGATATGTTGCACAAGAATTATCAACTACTACACAGGCTTGTCTTTCTCAGTCATTTGGTATGATAACTGTAAGCAAGCTTATAGGATTCCAGAAATAG 3432 0.3826 MANIQKAIAPIFYILLISLLPLKITSSLKTEAEALVKWKNSLSSPLPFPSPLNTWSLTNHINLCNWDAVVCDTTNTTILEINLSNANLSGTLTSLDFASLPNLTLLDLDNNRFSGSIPSTIGNLSKLTFLDLENNLLEDALPSELSRLRELQHVSFYNNNFNGTIPYQLTNLPKVSYLELGANYFVSSLDWSQYSNMPSLNYLGLEENRFTGDIPSFIVECKNLTYLDLSQNKWNSKIPEPIYSNLKRLEYLNLTNCGLEGKLSSNLSMLSNLKELRIGNNMFNSPIPTEIGLLSRLQILELNNVSAHGEIPSSIGQLKKLVHLDLSANFFNFSVPYEIGLCTNLTFMSLAGNNLTGSLPLSLANLTKLSELGLSENSFSGQISASLISNWTELTSLQVQNNRLNGTVPSQIGLLKKITLLYLYKNDFSGPIPKEIGNLKEMTDVPGDFGKNSPSLTNVYLSNNSFSGELPSDMCSGLNLLILTVNNNSFSGPLPNSLRNCSSLTRVRLDDNQFSGNITEAFGVHPNLNFITLSRNRFHGYLSSDWGKCTNLTEMEMSGNKLSGKIPSEISKLSKLQYLSLHSNEFTGNIPREIGNLSLLYNLNLSRNHFSGEIPKSIGRLSKLNVVDLSDNNFKGSIPKEIGNCNQLQSLNLSHNNLSGTIPYELGNLFYLQSLLDVSSNNLLGEIPQNLQKLASLEILNVSHNNLSGTIPQSFSSMFSLQSVDFSYNHLSGLIPTGGVFQKETAEAFAGNSGLCGEVKGLACATTLSQKNSGGTNKKVLIGVTTSVVGVLFIGMIGFGILLFQRKAKKLSEESKSNEDNDQSISMVWGRDAKFTFSDLVKATNDFNEKYCIGKGGFGSVYKAELATGQIVAVKRFNISDSDDIPKVNQMSFLNEIRTLTGVRHRNIIKLYGFCSRRTQMFLVYEHVDRGSLGKLLYGREGKLELSWGTRVEILQGIAHAISYLHSDCSPPIVHRDITLNNILLDSNFVPHLADFGTAKLLSSNNSTWSSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVLEILMGKHPGEFLGTLYSNKSLTLMEVLVKDIVDQRLPPPTDKLGETIVFTMRVALACTRAAPESRPMMRYVAQELSTTTQACLSQSFGMITVSKLIGFQK 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04014 1143 FunFam Leucine-rich repeat receptor protein kinase MSP1 809 927 - -
Trre13g04014 1143 SUPERFAMILY L domain-like 452 742 - -
Trre13g04014 1143 SUPERFAMILY Protein kinase-like (PK-like) 823 1118 IPR011009 -
Trre13g04014 1143 Gene3D Ribonuclease Inhibitor 195 443 IPR032675 -
Trre13g04014 1143 Gene3D Ribonuclease Inhibitor 444 765 IPR032675 -
Trre13g04014 1143 SMART LRR_typ_2 366 390 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 621 645 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 694 717 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 718 743 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 573 597 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 124 148 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 270 294 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 318 342 IPR003591 -
Trre13g04014 1143 SMART LRR_typ_2 100 123 IPR003591 -
Trre13g04014 1143 FunFam Nuclear pore complex protein NUP107 28 191 - -
Trre13g04014 1143 ProSiteProfiles Protein kinase domain profile. 847 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04014 1143 Pfam Protein kinase domain 849 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04014 1143 SUPERFAMILY RNI-like 80 435 - -
Trre13g04014 1143 CDD STKc_IRAK 853 1118 - -
Trre13g04014 1143 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 446 1120 - -
Trre13g04014 1143 Pfam Leucine rich repeat 600 658 IPR001611 GO:0005515
Trre13g04014 1143 Pfam Leucine rich repeat 198 259 IPR001611 GO:0005515
Trre13g04014 1143 ProSitePatterns Protein kinases ATP-binding region signature. 853 875 IPR017441 GO:0005524
Trre13g04014 1143 ProSitePatterns Tyrosine protein kinases specific active-site signature. 973 985 IPR008266 GO:0004672|GO:0006468
Trre13g04014 1143 PRINTS Leucine-rich repeat signature 648 661 - -
Trre13g04014 1143 PRINTS Leucine-rich repeat signature 694 707 - -
Trre13g04014 1143 Pfam Leucine rich repeat N-terminal domain 29 72 IPR013210 -
Trre13g04014 1143 Pfam Leucine Rich Repeat 696 717 IPR001611 GO:0005515
Trre13g04014 1143 FunFam MDIS1-interacting receptor like kinase 2 928 1124 - -
Trre13g04014 1143 Gene3D Phosphorylase Kinase; domain 1 806 927 - -
Trre13g04014 1143 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 453 768 - -
Trre13g04014 1143 Gene3D Ribonuclease Inhibitor 28 194 IPR032675 -
Trre13g04014 1143 FunFam MDIS1-interacting receptor like kinase 2 195 388 - -
Trre13g04014 1143 Gene3D Transferase(Phosphotransferase) domain 1 928 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04014 Trre-Chr13 48259880 48263645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04014 223 1021 Receptor kinase-like Gene Family AT4G08850 42.193 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g04014 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04014 - - gmx:100786462 1269.6