Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04011 ATGTCAATCATAATGGCAGCACAATCATTGTTACTCTCTCAACCTTCACTCTTGTACACCAAAACCAAATGCTCAATTATCTCAAATTCTATTAAGCCCATCAAGCTACAAAACCCATCATCATCATGTAATAATAATTCTTCATCGTTTTCGCCCGCTCTCCCTCTAACTACTAGAAGGAGAAGAACTGGCAATGCTTCTTTTCTCACATTTGCTGTTGATGAATCTGGGGATATCGAGAAGGATCCATATGAAAATTTGGATGTCTTCATTGGTAATTTGCCTAGTAATATTGGATTTGAGACAGTTTTTAACCTTGCTAAGAAGGTTGGGACTGTAGTGGGTGTTGTGATAAATTATGTTCCTGGCCAAAGTAGTTATGCACGTGTAATTATGAAAACAGTTGAAGAAGTTGAGAAGGCTATGAAGAAGTTCAATCGCTATGAATTAAATGGAAAATATTTGACTGTTAGTAGGGAGAAACCAATACCAAAGCCTAAGCCCGAGCCAAAATATCGCATATATGGTTCCAATTATGGTATCAGGGTTGCAAACTTACCGAGGGATGTTGATCGTGGTCGCTTGGAGGAAATTTTCAGTAAACATGGTAAGGTTGAGAGTGTCAATATATTAGTCTCTGATGAAGAAGACGTCGATCAATTATCAACAGGTTATCTTAGATTCGCCGATGAGACTGATATCCATAATGTTATTGCTTCTCTTGACGGTCAGGAAATAGATGTAACCAGTGTGTTTCCTCAAGCATACTCTAACATGCATTCCAGGTTGCAAATAGTTCTCCAGCAACTGAAGGAAGGTTGCATGCATGTGTGGTGCAGATATAGTGGCATTGTAGCCTATAGACATGGGGCTGTCTATGTAAGGTTGAACCCCATTGAGTACAAATAA 909 0.3894 MSIIMAAQSLLLSQPSLLYTKTKCSIISNSIKPIKLQNPSSSCNNNSSSFSPALPLTTRRRRTGNASFLTFAVDESGDIEKDPYENLDVFIGNLPSNIGFETVFNLAKKVGTVVGVVINYVPGQSSYARVIMKTVEEVEKAMKKFNRYELNGKYLTVSREKPIPKPKPEPKYRIYGSNYGIRVANLPRDVDRGRLEEIFSKHGKVESVNILVSDEEDVDQLSTGYLRFADETDIHNVIASLDGQEIDVTSVFPQAYSNMHSRLQIVLQQLKEGCMHVWCRYSGIVAYRHGAVYVRLNPIEYK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04011 302 Gene3D - 74 168 IPR012677 -
Trre13g04011 302 PANTHER OS02G0815200 PROTEIN 49 247 - -
Trre13g04011 302 CDD RRM_SF 89 158 - -
Trre13g04011 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 247 IPR000504 GO:0003723
Trre13g04011 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 162 IPR000504 GO:0003723
Trre13g04011 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 155 IPR000504 GO:0003723
Trre13g04011 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 247 IPR000504 GO:0003723
Trre13g04011 302 Gene3D - 174 262 IPR012677 -
Trre13g04011 302 SUPERFAMILY RNA-binding domain, RBD 89 247 IPR035979 GO:0003676
Trre13g04011 302 SMART rrm1_1 180 254 IPR000504 GO:0003723
Trre13g04011 302 SMART rrm1_1 88 158 IPR000504 GO:0003723
Trre13g04011 302 CDD RRM_SF 181 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04011 Trre-Chr13 48235170 48236755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04011 88 272 Eukaryotic Initiation Factors Gene Family AT2G36660 24.737 1.91e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04011 - - tpra:123920832 208.379