Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04009 ATGGAAGATTCTGGAAAATCCATCATCAACAGTAGCAGTAAATTATTGAATCCATGGACGCTGCACTTTCAGAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAGCTTGTTCAAACAACCGGTTTTGCTTCCTTGCAATCACTTGTTCTGCAGTTCCTGCTTGGTGGATACTACTGAGATTGGTGTTTGTTCTAAGTGTGCTCTCTGTAATACTAAGTACGCTCAATCAGATGTAAGGCATTTGTCTTTTGTTGAAAACATGGTAGCGATTTATAAGAATTTGGATGCGACTTTTTGTTCTAATGCGTTTCAGCAAAGATCTTCTGATAACACAAGGGTTTTGGAGCAATGCCAAACTCTTCACAATTCAGCAGGTGGTAATAAAAAGGCTGATAAGGTTCTGCAGAATTCATGCATTTCAAATGGAGTTGGGGTTGTTCGGAATGTCAAATCCAGAATTACAATGAATGGTAAAGCTGAGGAGCTTGAAATGTCTCGCAGAGGAGGGGCTAACAACCACGTTGCAGCGAAGCCTAATTCAACGAGATGTTCCCAAACAGAAATTGGGGGTCATATGGAAATGGATTTGAATCAAGTGACACAATCAGCACCTGATAGCCCTCCATTTTGTGATACCAAAGGTTCTGATAATGGTTGCAGCGATCAAAACAGTGAGAAGCCACTCAATCTTGAGAGATCTGAAAATTCATCACTGAAAAGACCAAACACAGGAAAAGGTAACTTGAAAGAAAGAATGGCCCAGTTCAGGTCTGAAAGTTCTGCCTCTGAAAATGATGATCTTATGAGAGATCTTAAGAGACAAAAGAATCTTACTAATGGAGATGGTATTATTCAACAAAGCACCTCATATCATAATAAGCTCGTGGTTTCTCGCTGTGACTCTGGCACTAATTATGAAAAGGATCCTAGTGCACTCATTCCTTCAAATGCACCAAATGACTTGGGTCCAAATACTAGCATCTGCTTGTTTTGCCAGTCCTCTAAAATTTCAGAGGTTACTGGGCCACTGCTGCATTATGCAAATGGGATTTCAGTTGAAGGAGATGCTGCAATGAAACCAAATGTCCTACACGTGCATAAAGTCTGTATCGACTGGGCACCACAAGTGTATTTTGTTGGCGAAACTGTTAAGAATTTGAAGGCAGAAGTGGCCAGGGGAACAAAGCTTAAATGCACCAAATGCAGTCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGTAGAAGAACTTATCATGTCCCTTGTGCAATGGACATCTCTACTTGCCGCTGGGATCATGTGGATTATCTCTTGCTATGTCCTGTTCATTCAAATGTCAAATTTCCAAGTGAGAAATCCAGTCATAATAAACATGCAATTCAGAACCATCCTATTTCATCTCATCTGCCATTTCAACAGTCAGATCAAATGTTGGAAGCTTCACAACATTATGGTAAAAAAATGGTTTTCTGTGGGTCTGCTCTATCAAATGAAGAAAAGGTGCTATTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGACCAAGTGTTGGACCTCAAATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGAGCATGCTCCAGGACATTGAAAGTTTTGAGGGCGATTCTAAATGGACAATGGATCCTAAAAATTGACTGGATAAGAGCATGCATGGAAGCGATGGATCTTGTAGATGAAGAACTGTATGAAGTTGTTCTTGACAACCAAGGGTGTCAGGGCGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTACTTTTCTGGTGATTATGATTTGAGTTATAAGAAATATCTTGAAGAGTTAGTTGAAGGGGGAGGAGGTGCTGTTTTGAAAAGCAAGGATGAATTGGAAGTAGGAAGAGATGCAAACTTGCTAGCTGTTTACAATCTTGATCCTCCACAAGGATGTAAGCTAGGGGAGGAAGTTTCCATTCTTTGGCAGAGACTGAATGAAGCAGAGGATTTAACTGCAAATACTGTTGGTCACACTTGGATTCTGGAGTCAATTGCTGCATGTAAGTTGCAGCCTTTTAGTTAG 2109 0.4106 MEDSGKSIINSSSKLLNPWTLHFQKLALELKCPLCLSLFKQPVLLPCNHLFCSSCLVDTTEIGVCSKCALCNTKYAQSDVRHLSFVENMVAIYKNLDATFCSNAFQQRSSDNTRVLEQCQTLHNSAGGNKKADKVLQNSCISNGVGVVRNVKSRITMNGKAEELEMSRRGGANNHVAAKPNSTRCSQTEIGGHMEMDLNQVTQSAPDSPPFCDTKGSDNGCSDQNSEKPLNLERSENSSLKRPNTGKGNLKERMAQFRSESSASENDDLMRDLKRQKNLTNGDGIIQQSTSYHNKLVVSRCDSGTNYEKDPSALIPSNAPNDLGPNTSICLFCQSSKISEVTGPLLHYANGISVEGDAAMKPNVLHVHKVCIDWAPQVYFVGETVKNLKAEVARGTKLKCTKCSLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHVDYLLLCPVHSNVKFPSEKSSHNKHAIQNHPISSHLPFQQSDQMLEASQHYGKKMVFCGSALSNEEKVLLINFASKVGATVTKCWTSNVTHVIAATDANGACSRTLKVLRAILNGQWILKIDWIRACMEAMDLVDEELYEVVLDNQGCQGGPKAGRLRALANEPKLFSGLKFYFSGDYDLSYKKYLEELVEGGGGAVLKSKDELEVGRDANLLAVYNLDPPQGCKLGEEVSILWQRLNEAEDLTANTVGHTWILESIAACKLQPFS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04009 702 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Trre13g04009 702 SUPERFAMILY BRCT domain 491 577 IPR036420 -
Trre13g04009 702 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Trre13g04009 702 FunFam Breast cancer type 1 susceptibility protein homolog 488 594 - -
Trre13g04009 702 SMART ring_2 32 71 IPR001841 -
Trre13g04009 702 MobiDBLite consensus disorder prediction 162 187 - -
Trre13g04009 702 Pfam BRCT domain, a BRCA1 C-terminus domain 600 701 IPR001357 -
Trre13g04009 702 ProSiteProfiles BRCT domain profile. 598 702 IPR001357 -
Trre13g04009 702 ProSiteProfiles BRCT domain profile. 488 577 IPR001357 -
Trre13g04009 702 Pfam PHD-like zinc-binding domain 368 446 - -
Trre13g04009 702 MobiDBLite consensus disorder prediction 201 268 - -
Trre13g04009 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 449 IPR013083 -
Trre13g04009 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 107 IPR013083 -
Trre13g04009 702 Gene3D BRCT domain 600 696 IPR036420 -
Trre13g04009 702 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 10 265 IPR031099 GO:0006281|GO:0006974
Trre13g04009 702 SMART BRCT_7 485 567 IPR001357 -
Trre13g04009 702 SMART BRCT_7 600 696 IPR001357 -
Trre13g04009 702 CDD BRCT_Bard1_rpt1 492 570 - -
Trre13g04009 702 FunFam Breast cancer associated RING 1 325 449 - -
Trre13g04009 702 ProSiteProfiles Extended PHD (ePHD) domain profile. 327 447 IPR034732 -
Trre13g04009 702 MobiDBLite consensus disorder prediction 201 245 - -
Trre13g04009 702 Pfam Zinc finger, C3HC4 type (RING finger) 32 71 IPR018957 GO:0046872
Trre13g04009 702 SUPERFAMILY BRCT domain 602 701 IPR036420 -
Trre13g04009 702 SUPERFAMILY RING/U-box 29 95 - -
Trre13g04009 702 Pfam BRCA1 C Terminus (BRCT) domain 489 564 IPR001357 -
Trre13g04009 702 Gene3D BRCT domain 487 593 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04009 Trre-Chr13 48223083 48228880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04009 521 634 Core DNA Replication Machinery Family AT4G02110 31.667 6.07e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04009 K10683 - gmx:100784883 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04009 13 48223083 48228880 Trre13g04009 13 48223083 48228880 ECH