Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04003 ATGGGGAGTAGGGTTAGGAAACCGAGGAAGAGATTGCAGAAGATAATGAACTGTCTTTGTTCAGGGGAGATTGTAAAAGAACAGGAAGATACAATGGTTCCTAGTTCGTCCGAATCGCTTGCAACCAAGGATTTTTTTTCCGCAACGGCAAGTGGATTTTCTGGCCAAGATGGACAAGTTGAGAGGAGGTTGGATTCTGGTAACATAGAACAAGCTGAATTGTCGTTGCGTGAGAGTGGTATCTTGAATTATGAGGAAGCTAGAGCGCTATTAGGGAGATATGAATATCAGGAAGGAAATATAGAAGCCGCTTTGCATGTTTTTGAAGGCATAAATATAGCTGCTGTGACTCCCAAGATAAAAGATTTTCTTGCCAAAAGCAGAGAACGCCCCAAGAGACGCTCTCGGAATTACACTACTCCACCAATGTCTATACATACAGCTGGATTACTATTAGAAGCAATCTTGCTAAAGGCAAAATGTTTGCAGGTTCTTGGAAGGTTTGAAGAATCTGCCCAAACATGCAAAGTTATTCTGGACATGATTGAGTCTTCTTTACCTGAAGGCTTGCCTCGAAACTTTGGTGCCGAATGTAAATTGCAGGAGACTCTAAGCAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGTTATTTTGTCTTACAGGCGTGCACTACTTCATCGATGGAATCTTGATGCAGAGACCACAGCAAAAATTCAAAAAGAATTTGCTATTTTTCTTCTATATAGTGGAGCGGAAGAAATTCCCCCAGATTTTCGTTCCCATATGGACAGTTCATTTGTACCAAGAAATAACATTGAAGAGGCTATTCTTCTTTTAATGATTTTGCAAAGAAAAGTCTCTCTAAATAAAATTGAGAAGGATCCTTCAATTCTGGAGCACCTTTCGTTTGCTCTGTCAGTTTCTGGGGATTTGACAGCTTTAGCCAACCAATGGGAAGAATTACTCCCTGGTACTATCAATCGACGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGATAAGGACTTGGTTGCACTTAATCTTCTTAAAAAGTTGTTGAGTAGCAGTGAGGACCCAAACCATGTTTCTGCTTTGTTGATGGCTTCTAAGATATGCTGCGAAAACCCTGAACTTGCAAAAGATGGGGTTAGCTATGCTAGCAGAGTGCGTGAGAACTTGGATGAAAAATGTAACCAGTTGGAAAGTCTCGCCAATTGCTTACTCGGTGTTTCACTTTCGACATACTCAAAATTTGCTGTTTCTAATTCTGAGACATTCGAGAGACAATCTGAGGCACTTCATTCACTAGAAACTGCAAGCACTATGACCAGAATGAATGACCCTCTTGTACTTTACTATTTAAGTTTAGAATGTGCAGAACAAAGGAAGTTGGATTCTGCACTTCATTATGCAGAACGCTTTCTAAGCTTAGAAGCTGGGTCTAATATTAAAGGCTGGTTATTGTTAGCCCGGATATTATCAGCACAAAAACAATTTTTAGATGCTGAATCTATTGTTGATTCTGCTTTGGATCGGACTGGAATGTGGGATCAAGGAGTTTTGTTGCGAACAAAAGCTAAACTTCAAATTGCGCAGGGGAAGGTGCCAAGTGCCATTGAGACATATATTCGGCTTCTTGCTATTTTTCTGGTTCAGAGAAAAACTTTTGGTTCAAGAACGAAGCTATATAAGGACGGCAGAGATCATGCTAGGAACTTGGAAGTGGACGTATGGCATGATCTTGCTTATGTATACATAAGTCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATATCATGTAATAGGTACTATGCTCGAAGCAAAGGGTCTTTACAAAGAGGCTCTGAAATCTTTTCGTGATGCTTTGAACCTTGATCCTACACATGTCCCAAGCTTGATATCAACTGGTGCAGTTCTTAGACAGTACGATACTCCATCAAATCCTGCCGCTAGAAGCTTTCTAATGGATGCACTGAGGCTTGACAGAACTAATGCTTCTGCTTGGCATCATCTTGGCATTCTTCACAAGGCTGAAGGTAGAGTGTTTGAAGCTGCAGAATGTTTTCAGGCAGCAAACTCTCTTGAAGAATCAGAACCAGTGGAACCTTTCAGATGA 2190 0.4105 MGSRVRKPRKRLQKIMNCLCSGEIVKEQEDTMVPSSSESLATKDFFSATASGFSGQDGQVERRLDSGNIEQAELSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGINIAAVTPKIKDFLAKSRERPKRRSRNYTTPPMSIHTAGLLLEAILLKAKCLQVLGRFEESAQTCKVILDMIESSLPEGLPRNFGAECKLQETLSKAVELLPELWKLADCPREVILSYRRALLHRWNLDAETTAKIQKEFAIFLLYSGAEEIPPDFRSHMDSSFVPRNNIEEAILLLMILQRKVSLNKIEKDPSILEHLSFALSVSGDLTALANQWEELLPGTINRRERYHALALCYYGADKDLVALNLLKKLLSSSEDPNHVSALLMASKICCENPELAKDGVSYASRVRENLDEKCNQLESLANCLLGVSLSTYSKFAVSNSETFERQSEALHSLETASTMTRMNDPLVLYYLSLECAEQRKLDSALHYAERFLSLEAGSNIKGWLLLARILSAQKQFLDAESIVDSALDRTGMWDQGVLLRTKAKLQIAQGKVPSAIETYIRLLAIFLVQRKTFGSRTKLYKDGRDHARNLEVDVWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRYHVIGTMLEAKGLYKEALKSFRDALNLDPTHVPSLISTGAVLRQYDTPSNPAARSFLMDALRLDRTNASAWHHLGILHKAEGRVFEAAECFQAANSLEESEPVEPFR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04003 729 Gene3D Tetratricopeptide repeat domain 584 726 IPR011990 GO:0005515
Trre13g04003 729 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Trre13g04003 729 SMART tpr_5 690 723 IPR019734 GO:0005515
Trre13g04003 729 SMART tpr_5 494 527 IPR019734 GO:0005515
Trre13g04003 729 SMART tpr_5 586 619 IPR019734 GO:0005515
Trre13g04003 729 SMART tpr_5 459 492 IPR019734 GO:0005515
Trre13g04003 729 SMART tpr_5 152 185 IPR019734 GO:0005515
Trre13g04003 729 SMART tpr_5 620 653 IPR019734 GO:0005515
Trre13g04003 729 SUPERFAMILY TPR-like 533 720 IPR011990 GO:0005515
Trre13g04003 729 ProSiteProfiles TPR repeat profile. 690 723 IPR019734 GO:0005515
Trre13g04003 729 ProSiteProfiles TPR repeat region circular profile. 620 653 - -
Trre13g04003 729 Gene3D Tetratricopeptide repeat domain 58 582 IPR011990 GO:0005515
Trre13g04003 729 SUPERFAMILY TPR-like 337 559 IPR011990 GO:0005515
Trre13g04003 729 PANTHER PROTEIN NPG1 16 729 IPR043376 -
Trre13g04003 729 Pfam Tetratricopeptide repeat 621 653 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04003 Trre-Chr13 48177265 48182342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04003 5 729 Calmodulin-binding Proteins AT4G28600 55.270 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04003 K21843 - gmx:100784353 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04003 13 48177265 48182342 Trre13g04003 13 48177265 48182342 ECH
Trre1g02800 1 23122396 23125926 Trre13g04003 13 48177265 48182342 PCT