Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03996 ATGGATCATGTGATTGGTGGGAAGTTTAAATTGGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGAGAGGAGGTTGCTGTTAAGCTGGAGCCTGTGAAGACCAAGCATCCACAGCTTCACTATGAATCAAAATTGTATATGCTACTTCAAGGAGGAACGGGGGTGCCTCACCTCAAGTGGTTTGGAGTTGAAGGAGAGTATAATGTGATGGCAATTGACCTTCTTGGACCTAGTCTGGAAGATCTGTTCAATTATTGCAACCGCAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAATAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTCTACATCATCGACTATGGTCTTGCCAAAAAATTCAGAGATCTTCAGACTCATAAGCACATACCGTACCGGGAAAACAAGAACCTTACAGGGACAGCTCGATATGCGAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCGCTTGGTTATGTTCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAAGGACTGAAGGCGGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAGCTGTCAACTTCCATAGAAGTGCTCTGCAAATCATATCCCTCAGAGTTTGTATCATACTTTAGCTACTGCCGATCATTGCGGTTTGAAGACAAGCCTGACTATTCATATTTGAAGAGGCTTTTTCGAGATCTATTTATTCGAGAAGGTTATCAATTTGACTATGTTTTCGACTGGACAATATTGAAGTATCCACAGATTAGTGGCAGCTCTAGAGGACGGCATGACAGTGGCAAGGCGGCTATGAATGCAGGGCCATCTGTACAGAAGCCAGAAAAGATCTCAGTTGGAAAAGAGCTTCGAGAGAGATTCACTGGTGCTGTTGAAGCATTCTCGCGGAGGAACCCAAGTCCCCGTGCTGAACACTCCAAACATAGGAATTATGAGGATGCAGCAGCCGTGCACAAGGATGCGTATCATGATCAAGAGAAGGGACGCAGTTCCGCTCGATATGGAAGCAGTTCAAGAAGACCAATAATTTCATCATCAACCAGGCCAAGCTCCTCAGGTGATCATACAGACAGTCGTACTGGCCGGCTGACCTCATCTAGTAGCCGTCCATCTACCGCACAGAGAATTCAACCTGTGTATGAGACCAAACAGCCAACCTACACGCGCTCGGGTTCTACCAGAGGCAACCGCGATGATCCTCTGCGGAGTTTTGAACTCCTCTCTATCAGGAAGTAA 1380 0.442 MDHVIGGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGEYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKLSTSIEVLCKSYPSEFVSYFSYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQISGSSRGRHDSGKAAMNAGPSVQKPEKISVGKELRERFTGAVEAFSRRNPSPRAEHSKHRNYEDAAAVHKDAYHDQEKGRSSARYGSSSRRPIISSSTRPSSSGDHTDSRTGRLTSSSSRPSTAQRIQPVYETKQPTYTRSGSTRGNRDDPLRSFELLSIRK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03996 459 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03996 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre13g03996 459 MobiDBLite consensus disorder prediction 300 459 - -
Trre13g03996 459 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre13g03996 459 MobiDBLite consensus disorder prediction 325 339 - -
Trre13g03996 459 MobiDBLite consensus disorder prediction 379 442 - -
Trre13g03996 459 FunFam Putative Casein kinase I 1 85 - -
Trre13g03996 459 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03996 459 FunFam Casein kinase 1-like protein 1 330 - -
Trre13g03996 459 MobiDBLite consensus disorder prediction 443 459 - -
Trre13g03996 459 MobiDBLite consensus disorder prediction 346 378 - -
Trre13g03996 459 PANTHER CASEIN KINASE-RELATED 9 399 - -
Trre13g03996 459 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre13g03996 459 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03996 459 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Trre13g03996 459 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03996 Trre-Chr13 48103183 48107113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03996 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 2.00e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre13g03996 Pkinase 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03996 K08960 - cam:101493293 832.787