Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03995 ATGGATTCTGCGAGGAGTTGGTTATCGAAGTTTCAACCGCGAGATAAACTGAGAGCTTCATCGAGGAAAAAAGATGATGTTAATGTCGGAATTGAAGATTCCAATGCGTCTCTTGATGATGATGCTCTTTCTAGCATTACCAAGCAGAAGGTTGCCGCTGCTAAACAATATATTGAGAATCATTACAAGGAACAAATGAAGAATCTTCAAGAGAGAAAAGAACGGCGAACAATTTTGGAAAAGAAGTTGGCGGATGCCGATGTCTCTGAGGAAGATCAAAATAATCTACTTAAATTTTTAGAGAAGAAGGAAACGGAATATATGCGTCTTCAGAGGCATAAAATGGGTGTTGAGGATTTTGAGATGTTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTGTGTAGGGAAAAGACTACAGAGCATGTATATGCAATGAAAAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTAGAACATGTCAGAGCTGAAAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTATATCTTATTATGGAGTATCTTCCGGGAGGGGATATGATGACTCTTCTTATGAGAAAGGATACATTGACCGAAGACGAAGCCCGATTTTATGTAGGAGAAACGGTTCTTGCTATCGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCCGACAACTTATTACTTGATAAATATGGGCACTTGAAACTATCAGATTTTGGACTATGTAAACCGTTAGACTGTAGTACACTTGAAGAATCAGATTTGTCTATTGGCCAGAATGCAAATGGAACTGCACAGAATGATGATCGTACAGGTCCAAAACGTACACAACAAGAACAGTTAGAAAACTGGCAGAAAAATAGGAGGACACTTGCTTATTCTACCGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTCGGATATCCGCCTTTTTATTCTGACGATCCAATGTCAACGTGTAGGAAGATAGTAAATTGGAAATCTCACCTGAAATTTCCTGAAGAAGCAAGGCTATCTCCGGAGGCCAAAGATCTTATAAGTAAGCTTTTGTGTAATGTCAACCAGAGACTGGGATCGAATGGTGCAACTGAAATAAAGTCTCATCCATTCTTTGAAGGTGTTCAATGGGAAAAGTTGTATCAAATGGAAGCAGCATTTATTCCTGAAGTCAATGACGAGTTAGATACTCAAAATTTTGAAAAATTTGAAGAGTCTGACAGCCAGACTCATTCATCATCAAGATCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACTTGAATTTTGTGGGATACACATACAAGAACTTTGAAATTGTTAACGACTATCAAGTTCCTGGGATGGCCGAGCTAAAGAAAACCTCCAAACCAAGGAGGCCATCTGTCAAGTCGTTGTTTGATGGCAATTCGGAGAATTCTGAGGCATCCGATGTTTCAGAAGTGTCTCCAAGCAATCAACCTACTCAATGA 1611 0.3923 MDSARSWLSKFQPRDKLRASSRKKDDVNVGIEDSNASLDDDALSSITKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTEHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEESDLSIGQNANGTAQNDDRTGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVNQRLGSNGATEIKSHPFFEGVQWEKLYQMEAAFIPEVNDELDTQNFEKFEESDSQTHSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKTSKPRRPSVKSLFDGNSENSEASDVSEVSPSNQPTQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03995 536 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03995 536 CDD STKc_NDR_like 118 482 - -
Trre13g03995 536 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03995 536 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Trre13g03995 536 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Trre13g03995 536 MobiDBLite consensus disorder prediction 281 302 - -
Trre13g03995 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 470 - -
Trre13g03995 536 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g03995 536 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Trre13g03995 536 CDD MobB_NDR_LATS-like 54 115 - -
Trre13g03995 536 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Trre13g03995 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Trre13g03995 536 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre13g03995 536 MobiDBLite consensus disorder prediction 512 536 - -
Trre13g03995 536 Gene3D Transferase(Phosphotransferase) domain 1 313 436 - -
Trre13g03995 536 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre13g03995 536 MobiDBLite consensus disorder prediction 9 26 - -
Trre13g03995 536 Gene3D Transferase(Phosphotransferase) domain 1 204 282 - -
Trre13g03995 536 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03995 536 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre13g03995 536 Gene3D Phosphorylase Kinase; domain 1 437 447 - -
Trre13g03995 536 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Trre13g03995 536 MobiDBLite consensus disorder prediction 498 536 - -
Trre13g03995 536 SUPERFAMILY Protein kinase-like (PK-like) 93 472 IPR011009 -
Trre13g03995 536 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03995 Trre-Chr13 48093385 48100349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03995 1 513 AGC Kinase Gene Family AT2G20470 78.352 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre13g03995 Pkinase 1.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03995 K08790 - gmx:100805940 956.436