Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03985 ATGGGTTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTAGATTTTATCCAAGTGATGAAGAATTGGTTTGTCACTATCTTTACAAAAAGATCACAAATGAGGAAGTTCTTAAGGGTACTTTGATTGAAATTGATCTTCACATATGTGAACCATGGCAACTTCCTGAGGTGGCAAAGCTAAATGCAAATGAATGGTATTTCTTTAGCTTTAGGGACCGTAAATATGCAACTGGATTTAGAACAAATAGAGCAACTATCTCTGGGTATTGGAAAGCAACTGGGAAAGATCGTACGGTGTTAGATCCAATCACTCAAGAGGTTGTAGGAATGAGGAAAACATTGGTGTTCTATAAGAACAGAGCTCCAAATGGTATCAAAACTGGATGGATTATGCATGAATTTCGTTTGGAGACACCTCACATGCCTCCTAAGGAGGACTGGGTGTTGTGTAGAGTCTTTCACAAAAGCAAAGAAGACAACAATAACAATTCCAAACTCAACACACAACAACTCATGTATGAGACAACACCTCCATCCCTAACTTTGTCGTCATCATCTCCAACAAATTACCAAACTATCCCTATTCCCTATAACCGAATTGATTCTTTTTCTTCATCTATGACAACACTTCATCATTTAAATCCAAACCAAAACAATACTACTTCCATCATGAATAATCTCCTTCACTATTCACGTGAAATAAATCATCCAAATAATAATAATGATAGTATTATTACTCAAATTAGTTCCAAATGTGATGATGGATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGTCTAGTAGAAGAAGATGGCGTGGCTTCAAACTTGGATGCAATAAGATTTGAGGTTGATAATAATAATATGGTCATGCTATAA 888 0.3615 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVLDPITQEVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNNNSKLNTQQLMYETTPPSLTLSSSSPTNYQTIPIPYNRIDSFSSSMTTLHHLNPNQNNTTSIMNNLLHYSREINHPNNNNDSIITQISSKCDDGYGFLWNMDLEENSLVEEDGVASNLDAIRFEVDNNNMVML 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03985 295 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Trre13g03985 295 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Trre13g03985 295 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Trre13g03985 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 226 - -
Trre13g03985 295 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03985 Trre-Chr13 47991234 47998177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03985 6 159 NAC Transcription Factor Family AT1G56010 59.259 1.21e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g03985 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03985 - - tpra:123889826 532.717