Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03984 ATGAATCTTTCAGTTCCGCCTGGTTTTGCATCCCTAACATCTTTTTTTCTCAAAAGGGATGACAAGGTTACGAAAACCGATAAGTCTGACCCAATCCAAATAGAGACTAATCCTGAGATTGATGACACTTCTTCATATAATCAGATTTATATGCAACGGCCGTGGATAATATTGGACCAGAGCAAGCGCAAACCTGAGGAATCTCACACAGAGCATCTTCCTGTGGTTAAGTCGAATCCCCTTACAAATTCTTCTCGTCCAAAAGGGACCACATATGGATGTCCAAAATGCAGTACTTGTGTAAAGGTAACAGCGAGGTGGCGTCCTAAGGACGCGAAAAGAGAAATTCTGGAGGAAGTTCCAATTTTCTATCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATCGCAAGCATACGTTCAAGAGCAGAACCTTATGGAATTTGCCGTATAGTCCCTCCTACTAGCTGGGAACCACCATGTACTCCTGAGAAAAAGAATGTATTGGAAAACTCTGAATTTGTTGCTCGAATTCAGCGAATTGATGGGAACCAAGTTCAGCATGAACCAGAAATTATGGCTAGCTCTCATGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGACACGGACTCTCATCTTGGTAATAGAAGCACTTGCACCCCTAATAACGTGAATGTTGAAGACGGTAACAATGAGCCTGAACATGGTCCTAAATTCACTATCAAAACATTTAAGAAAATGGCAGATGAATTTAAGACCCAATACTTCAACTACAAGAATAAGAATAAGATTATGGATTCTGATCCATCTGTTGAGAATATTGAGGATGAATACAGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTCTGTGGTGAGACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACGGTTTCTGATCCTCTAAAGGCGAATAATTACCCTGAATATTTGAAATCTGGATGGTACTTAAATAATATGCTTTCACTCCCAGGTTCTCTTCTTTCTTTTGAAAGCCCTGAAGCTGCACGCAAATTTTCCCCTACGGTACATGTAGGAATGTGCTTTTCTCCACTCAAATGGAAAGTTGAAGAGCACCAATTATACTCATTGTGTTGCTTGCATCTGGGTGAACCCAAAGTATGGTATAGTGTCCCGGGAAGATTTGCTGCTGACTTTGAAACAATTTGGAAAAAGTATCTCCGAGCGCTAAATATGTATGCAGGACAGCCTGATATGCATGATAATCTGGCTATGCAGTTATCCTGCTCAATACTGAAGGATGCTGGTATACCAGTATATCGTTGTGTTCAGTATCCTCGGGAATTTGTTCTTGTCTTACCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGCAAGTTTTGCTCCTCTTGAGTGGCTGCCACATGGACAGAATGTAGTAGAACTATATTGTGAACAGAAGAGAAAGACATTAATTTCATACGATAAGCTGTTACTGGGAACAGCAAGGGAAGCTGTGAGGGCCCGATGGGAAATTGATATATGTATGAAGAGCACGCCCGACAACTTAATATGTAAAGATGCTTATCAAAGAGATGGGATCTTAACAAAAGCTTTGAATTTTCGTATCAGGAGTGAAAGTTTGAAGAGGAAATTCATTTCAACTTCTTTCAAATCACAAAAAATGAATGAAAATTTTGATGCCAGTTGTAAAAGGGAGTGTAGTATATGTCTACGTGATTTATTCCTGTCTGCTGTTGGCTGTTCATGTTCGGATGACAAGTATGCGTGTCTTGATCATTCGAAACAGCTTTGTTCTTGCCCTTGGTCAGACAAAACTCTCCTCTTCCGTTACGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTTCAGTCTATAAATGGGCTAAAGAGGATCTTGGTTTAACCGTGCGCTCAGTTGCCTCCAAGAAATCGAAAGAAACCCCAGAAAAAGTTAATGATTCAAAAGGTTTGTTGAAAGAACCTATGTCGCGGTGGGCACAAGATGCATACAACAAGTGGAGACGGTGTCAATCGCAGGCAACACCAAATGCTTCAGAGGGGAAACAAAGAGAAAAGGCCTCCCAAGCCCAGCAGACATCTAGTAGCACTCACAATAGTTCGTGCGCCATTAATCCAAAAAGGAACACAACTTCACTTCATTCAACAATATCAAACGAGATCAAAGCTAAAGAGAAAATGGCGGGGCACAATTCTGTTGCAACAGGCATTGGCGAAGGAAGTAAGTCTGCTGGGATCAAACCTGATAGTAAGGCAGTTGGGGATAAGTTCACAACTTCAAAGAAAGTAGGAGACCCAAAAGCTTCTGAAACTCCACGTTCGCGTTTCTTGTCTTTTGTACAGGAAAACATTTTGGTTGAAGTTTCGTCTAGTTCTTCAGAATCCGATTAG 2478 0.4068 MNLSVPPGFASLTSFFLKRDDKVTKTDKSDPIQIETNPEIDDTSSYNQIYMQRPWIILDQSKRKPEESHTEHLPVVKSNPLTNSSRPKGTTYGCPKCSTCVKVTARWRPKDAKREILEEVPIFYPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTSWEPPCTPEKKNVLENSEFVARIQRIDGNQVQHEPEIMASSHDTTETKRRKVMKVDTDSHLGNRSTCTPNNVNVEDGNNEPEHGPKFTIKTFKKMADEFKTQYFNYKNKNKIMDSDPSVENIEDEYRRIVQNPTEEIEVLCGETLEAGDFSSGFPIPTVSDPLKANNYPEYLKSGWYLNNMLSLPGSLLSFESPEAARKFSPTVHVGMCFSPLKWKVEEHQLYSLCCLHLGEPKVWYSVPGRFAADFETIWKKYLRALNMYAGQPDMHDNLAMQLSCSILKDAGIPVYRCVQYPREFVLVLPGAYHSGFDCGFNCSEAASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGTAREAVRARWEIDICMKSTPDNLICKDAYQRDGILTKALNFRIRSESLKRKFISTSFKSQKMNENFDASCKRECSICLRDLFLSAVGCSCSDDKYACLDHSKQLCSCPWSDKTLLFRYEISELEVLHQALDGKLSSVYKWAKEDLGLTVRSVASKKSKETPEKVNDSKGLLKEPMSRWAQDAYNKWRRCQSQATPNASEGKQREKASQAQQTSSSTHNSSCAINPKRNTTSLHSTISNEIKAKEKMAGHNSVATGIGEGSKSAGIKPDSKAVGDKFTTSKKVGDPKASETPRSRFLSFVQENILVEVSSSSSESD 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03984 825 MobiDBLite consensus disorder prediction 783 798 - -
Trre13g03984 825 ProSiteProfiles JmjN domain profile. 120 161 IPR003349 -
Trre13g03984 825 SMART JmjN_1 119 160 IPR003349 -
Trre13g03984 825 MobiDBLite consensus disorder prediction 62 88 - -
Trre13g03984 825 Pfam C5HC2 zinc finger 584 634 IPR004198 -
Trre13g03984 825 SMART cupin_9 329 494 IPR003347 -
Trre13g03984 825 MobiDBLite consensus disorder prediction 764 803 - -
Trre13g03984 825 PANTHER LYSINE-SPECIFIC DEMETHYLASE 114 747 - -
Trre13g03984 825 MobiDBLite consensus disorder prediction 215 233 - -
Trre13g03984 825 Pfam JmjC domain, hydroxylase 360 477 IPR003347 -
Trre13g03984 825 ProSiteProfiles JmjC domain profile. 329 494 IPR003347 -
Trre13g03984 825 MobiDBLite consensus disorder prediction 699 742 - -
Trre13g03984 825 MobiDBLite consensus disorder prediction 215 241 - -
Trre13g03984 825 Gene3D Cupin 105 478 - -
Trre13g03984 825 SUPERFAMILY Clavaminate synthase-like 242 521 - -
Trre13g03984 825 Pfam jmjN domain 121 154 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03984 Trre-Chr13 47968045 47971969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03984 4 673 JUMONJI Transcription Factor Family AT1G08620 46.220 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g03984 JmjC 2.1e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03984 K11446 - gmx:100804864 1028.08