Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03983 ATGAATCTTTCAGTTCCGCCTGGTTTTGCATCCCTAACATCTTTTTTTCTCAAAAGGGATGACAAGGTTACGAAAACCGATAAGTCTGACCCAATCCAAATAGAGACTAATCCTGAGATTGATGACACTTCTTCATATAATCAGATTTATATGCAACGGCCGTGGATAATATTGGACCAGAGCAAGCGCAAACCTGAGGAATCTCACACAGAGCATCTTCCTGTGGTTAAGTCGGTAACAGCGAGGTGGCGTCCTAAGGACGCGAAAAGAGAAATTCTGGAGGAAGTTCCAATTTTCTATCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATCGCAAGCATACGTTCAAGAGCAGAACCTTATGGAATTTGCCGTATAGTCCCTCCTACTAGCTGGGAACCACCATGTACTCCTGAGAAAAAGAATGTATTGGAAAACTCTGAATTTGTTGCTCGAATTCAGCGAATTGATGGGAACCAAGTTCAGCATGAACCAGAAATTATGGCTAGCTCTCATGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGACACGGACTCTCATCTTGGTAATAGAAGCACTTGCACCCCTAATAACGTGAATGTTGAAGACGGTAACAATGAGCCTGAACATGGTCCTAAATTCACTATCAAAACATTTAAGAAAATGGCAGATGAATTTAAGACCCAATACTTCAACTACAAGAATAAGAATAAGATTATGGATTCTGATCCATCTGTTGAGAATATTGAGGATGAATACAGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTCTGTGGTGAGACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACGGTTTCTGATCCTCTAAAGGCGAATAATTACCCTGAATATTTGAAATCTGGATGGTACTTAAATAATATGCTTTCACTCCCAGGTTCTCTTCTTTCTTTTGAAAGCCCTGAAGCTGCACGCAAATTTTCCCCTACGGTACATGTAGGAATGTGCTTTTCTCCACTCAAATGGAAAGTTGAAGAGCACCAATTATACTCATTGTGTTGCTTGCATCTGGGTGAACCCAAAGTATGGTATAGTGTCCCGGGAAGATTTGCTGCTGACTTTGAAACAATTTGGAAAAAGTATCTCCGAGCGCTAAATATGTATGCAGGACAGCCTGATATGCATGATAATCTGGCTATGCAGTTATCCTGCTCAATACTGAAGGATGCTGGTATACCAGTATATCGTTGTGTTCAGTATCCTCGGGAATTTGTTCTTGTCTTACCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGCAAGTTTTGCTCCTCTTGAGTGGCTGCCACATGGACAGAATGTAGTAGAACTATATTGTGAACAGAAGAGAAAGACATTAATTTCATACGATAAGCTGTTACTGGGAACAGCAAGGGAAGCTGTGAGGGCCCGATGGGAAATTGATATATGTATGAAGAGCACGCCCGACAACTTAATATGTAAAGATGCTTATCAAAGAGATGGGATCTTAACAAAAGCTTTGAATTTTCGTATCAGGAGTGAAAGTTTGAAGAGGAAATTCATTTCAACTTCTTTCAAATCACAAAAAATGAATGAAAATTTTGATGCCAGTTGTAAAAGGGAGTGTAGTATATGTCTACGTGATTTATTCCTGTCTGCTGTTGGCTGTTCATGTTCGGATGACAAGTATGCGTGTCTTGATCATTCGAAACAGCTTTGTTCTTGCCCTTGGTCAGACAAAACTCTCCTCTTCCGTTACGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTTCAGTCTATAAATGGGCTAAAGAGGATCTTGGTTTAACCGTGCGCTCAGTTGCCTCCAAGAAATCGAAAGAAACCCCAGAAAAAGTTAATGATTCAAAAGGTTTGTTGAAAGAACCTATGTCGCGGTGGGCACAAGATGCATACAACAAGTGGAGACGGTGTCAATCGCAGGCAACACCAAATGCTTCAGAGGGGAAACAAAGAGAAAAGGCCTCCCAAGCCCAGCAGACATCTAGTAGCACTCACAATAGTTCGTGCGCCATTAATCCAAAAAGGAACACAACTTCACTTCATTCAACAATATCAAACGAGATCAAAGCTAAAGAGAAAATGGCGGGGCACAATTCTGTTGCAACAGGCATTGGCGAAGGAAGTAAGTCTGCTGGGATCAAACCTGATAGTAAGGCAGTTGGGGATAAGTTCACAACTTCAAAGAAAGTAGGAGACCCAAAAGCTTCTGAAACTCCACGTTCGCGTTTCTTGTCTTTTGTACAGGAAAACATTTTGGTTGAAGTTTCGTCTAGTTCTTCAGAATCCGATTAG 2406 0.4069 MNLSVPPGFASLTSFFLKRDDKVTKTDKSDPIQIETNPEIDDTSSYNQIYMQRPWIILDQSKRKPEESHTEHLPVVKSVTARWRPKDAKREILEEVPIFYPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTSWEPPCTPEKKNVLENSEFVARIQRIDGNQVQHEPEIMASSHDTTETKRRKVMKVDTDSHLGNRSTCTPNNVNVEDGNNEPEHGPKFTIKTFKKMADEFKTQYFNYKNKNKIMDSDPSVENIEDEYRRIVQNPTEEIEVLCGETLEAGDFSSGFPIPTVSDPLKANNYPEYLKSGWYLNNMLSLPGSLLSFESPEAARKFSPTVHVGMCFSPLKWKVEEHQLYSLCCLHLGEPKVWYSVPGRFAADFETIWKKYLRALNMYAGQPDMHDNLAMQLSCSILKDAGIPVYRCVQYPREFVLVLPGAYHSGFDCGFNCSEAASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGTAREAVRARWEIDICMKSTPDNLICKDAYQRDGILTKALNFRIRSESLKRKFISTSFKSQKMNENFDASCKRECSICLRDLFLSAVGCSCSDDKYACLDHSKQLCSCPWSDKTLLFRYEISELEVLHQALDGKLSSVYKWAKEDLGLTVRSVASKKSKETPEKVNDSKGLLKEPMSRWAQDAYNKWRRCQSQATPNASEGKQREKASQAQQTSSSTHNSSCAINPKRNTTSLHSTISNEIKAKEKMAGHNSVATGIGEGSKSAGIKPDSKAVGDKFTTSKKVGDPKASETPRSRFLSFVQENILVEVSSSSSESD 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03983 801 MobiDBLite consensus disorder prediction 759 774 - -
Trre13g03983 801 Pfam C5HC2 zinc finger 560 610 IPR004198 -
Trre13g03983 801 Pfam JmjC domain, hydroxylase 336 453 IPR003347 -
Trre13g03983 801 SMART JmjN_1 95 136 IPR003349 -
Trre13g03983 801 SMART cupin_9 305 470 IPR003347 -
Trre13g03983 801 SUPERFAMILY Clavaminate synthase-like 218 497 - -
Trre13g03983 801 ProSiteProfiles JmjC domain profile. 305 470 IPR003347 -
Trre13g03983 801 ProSiteProfiles JmjN domain profile. 96 137 IPR003349 -
Trre13g03983 801 MobiDBLite consensus disorder prediction 191 209 - -
Trre13g03983 801 Gene3D Cupin 81 454 - -
Trre13g03983 801 MobiDBLite consensus disorder prediction 740 779 - -
Trre13g03983 801 MobiDBLite consensus disorder prediction 675 718 - -
Trre13g03983 801 PANTHER LYSINE-SPECIFIC DEMETHYLASE 90 723 - -
Trre13g03983 801 Pfam jmjN domain 97 130 IPR003349 -
Trre13g03983 801 MobiDBLite consensus disorder prediction 191 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03983 Trre-Chr13 47968045 47971969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03983 4 649 JUMONJI Transcription Factor Family AT1G08620 44.921 3.63e-175 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g03983 JmjC 2e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03983 K11446 - gmx:100804864 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03983 13 47968045 47971969 Trre13g03983 13 47968045 47971969 ECH