Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03982 ATGAATCTTTCAGTTCCGCCTGGTTTTGCATCCCTAACATCTTTTTTTCTCAAAAGGGATGACAAGGTTACGAAAACCGATAAGTCTGACCCAATCCAAATAGAGACTAATCCTGAGATTGATGACACTTCTTCATATAATCAGATTTATATGCAACGGCCGTGGATAATATTGGACCAGAGCAAGCGCAAACCTGAGGAATCTCACACAGAGCATCTTCCTGTGAATCCCCTTACAAATTCTTCTCGTCCAAAAGGGACCACATATGGATGTCCAAAATGCAGTACTTGTGTAAAGGTAACAGCGAGGTGGCGTCCTAAGGACGCGAAAAGAGAAATTCTGGAGGAAGTTCCAATTTTCTATCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATCGCAAGCATACGTTCAAGAGCAGAACCTTATGGAATTTGCCGTATAGTCCCTCCTACTAGCTGGGAACCACCATGTACTCCTGAGAAAAAGAATGTATTGGAAAACTCTGAATTTGTTGCTCGAATTCAGCGAATTGATGGGAACCAAGTTCAGCATGAACCAGAAATTATGGCTAGCTCTCATGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGACACGGACTCTCATCTTGGTAATAGAAGCACTTGCACCCCTAATAACGTGAATGTTGAAGACGGTAACAATGAGCCTGAACATGGTCCTAAATTCACTATCAAAACATTTAAGAAAATGGCAGATGAATTTAAGACCCAATACTTCAACTACAAGAATAAGAATAAGATTATGGATTCTGATCCATCTGTTGAGAATATTGAGGATGAATACAGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTCTGTGGTGAGACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACGGTTTCTGATCCTCTAAAGGCGAATAATTACCCTGAATATTTGAAATCTGGATGGTACTTAAATAATATGCTTTCACTCCCAGGTTCTCTTCTTTCTTTTGAAAGCCCTGAAGCTGCACGCAAATTTTCCCCTACGGTACATGTAGGAATGTGCTTTTCTCCACTCAAATGGAAAGTTGAAGAGCACCAATTATACTCATTGTGTTGCTTGCATCTGGGTGAACCCAAAGTATGGTATAGTGTCCCGGGAAGATTTGCTGCTGACTTTGAAACAATTTGGAAAAAGTATCTCCGAGCGCTAAATATGTATGCAGGACAGCCTGATATGCATGATAATCTGGCTATGCAGTTATCCTGCTCAATACTGAAGGATGCTGGTATACCAGTATATCGTTGTGTTCAGTATCCTCGGGAATTTGTTCTTGTCTTACCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGCAAGTTTTGCTCCTCTTGAGTGGCTGCCACATGGACAGAATGTAGTAGAACTATATTGTGAACAGAAGAGAAAGACATTAATTTCATACGATAAGCTGTTACTGGGAACAGCAAGGGAAGCTGTGAGGGCCCGATGGGAAATTGATATATGTATGAAGAGCACGCCCGACAACTTAATATGTAAAGATGCTTATCAAAGAGATGGGATCTTAACAAAAGCTTTGAATTTTCGTATCAGGAGTGAAAGTTTGAAGAGGAAATTCATTTCAACTTCTTTCAAATCACAAAAAATGAATGAAAATTTTGATGCCAGTTGTAAAAGGGAGTGTAGTATATGTCTACGTGATTTATTCCTGTCTGCTGTTGGCTGTTCATGTTCGGATGACAAGTATGCGTGTCTTGATCATTCGAAACAGCTTTGTTCTTGCCCTTGGTCAGACAAAACTCTCCTCTTCCGTTACGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTTCAGTCTATAAATGGGCTAAAGAGGATCTTGGTTTAACCGTGCGCTCAGTTGCCTCCAAGAAATCGAAAGAAACCCCAGAAAAAGTTAATGATTCAAAAGGTTTGTTGAAAGAACCTATGTCGCGGTGGGCACAAGATGCATACAACAAGTGGAGACGGTGTCAATCGCAGGCAACACCAAATGCTTCAGAGGGGAAACAAAGAGAAAAGGCCTCCCAAGCCCAGCAGACATCTAGTAGCACTCACAATAGTTCGTGCGCCATTAATCCAAAAAGGAACACAACTTCACTTCATTCAACAATATCAAACGAGATCAAAGCTAAAGAGAAAATGGCGGGGCACAATTCTGTTGCAACAGGCATTGGCGAAGGAAGTAAGTCTGCTGGGATCAAACCTGATAGTAAGGCAGTTGGGGATAAGTTCACAACTTCAAAGAAAGTAGGAGACCCAAAAGCTTCTGAAACTCCACGTTCGCGTTTCTTGTCTTTTGTACAGGAAAACATTTTGGTTGAAGTTTCGTCTAGTTCTTCAGAATCCGATTAG 2469 0.4066 MNLSVPPGFASLTSFFLKRDDKVTKTDKSDPIQIETNPEIDDTSSYNQIYMQRPWIILDQSKRKPEESHTEHLPVNPLTNSSRPKGTTYGCPKCSTCVKVTARWRPKDAKREILEEVPIFYPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTSWEPPCTPEKKNVLENSEFVARIQRIDGNQVQHEPEIMASSHDTTETKRRKVMKVDTDSHLGNRSTCTPNNVNVEDGNNEPEHGPKFTIKTFKKMADEFKTQYFNYKNKNKIMDSDPSVENIEDEYRRIVQNPTEEIEVLCGETLEAGDFSSGFPIPTVSDPLKANNYPEYLKSGWYLNNMLSLPGSLLSFESPEAARKFSPTVHVGMCFSPLKWKVEEHQLYSLCCLHLGEPKVWYSVPGRFAADFETIWKKYLRALNMYAGQPDMHDNLAMQLSCSILKDAGIPVYRCVQYPREFVLVLPGAYHSGFDCGFNCSEAASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGTAREAVRARWEIDICMKSTPDNLICKDAYQRDGILTKALNFRIRSESLKRKFISTSFKSQKMNENFDASCKRECSICLRDLFLSAVGCSCSDDKYACLDHSKQLCSCPWSDKTLLFRYEISELEVLHQALDGKLSSVYKWAKEDLGLTVRSVASKKSKETPEKVNDSKGLLKEPMSRWAQDAYNKWRRCQSQATPNASEGKQREKASQAQQTSSSTHNSSCAINPKRNTTSLHSTISNEIKAKEKMAGHNSVATGIGEGSKSAGIKPDSKAVGDKFTTSKKVGDPKASETPRSRFLSFVQENILVEVSSSSSESD 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03982 822 ProSiteProfiles JmjN domain profile. 117 158 IPR003349 -
Trre13g03982 822 Pfam jmjN domain 118 151 IPR003349 -
Trre13g03982 822 MobiDBLite consensus disorder prediction 212 230 - -
Trre13g03982 822 MobiDBLite consensus disorder prediction 780 795 - -
Trre13g03982 822 ProSiteProfiles JmjC domain profile. 326 491 IPR003347 -
Trre13g03982 822 MobiDBLite consensus disorder prediction 696 738 - -
Trre13g03982 822 Gene3D Cupin 102 475 - -
Trre13g03982 822 SMART JmjN_1 116 157 IPR003349 -
Trre13g03982 822 MobiDBLite consensus disorder prediction 62 85 - -
Trre13g03982 822 MobiDBLite consensus disorder prediction 212 238 - -
Trre13g03982 822 SMART cupin_9 326 491 IPR003347 -
Trre13g03982 822 MobiDBLite consensus disorder prediction 761 800 - -
Trre13g03982 822 Pfam C5HC2 zinc finger 581 631 IPR004198 -
Trre13g03982 822 Pfam JmjC domain, hydroxylase 357 474 IPR003347 -
Trre13g03982 822 PANTHER LYSINE-SPECIFIC DEMETHYLASE 111 744 - -
Trre13g03982 822 SUPERFAMILY Clavaminate synthase-like 239 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03982 Trre-Chr13 47968045 47971969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03982 4 670 JUMONJI Transcription Factor Family AT1G08620 45.804 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g03982 JmjC 2.1e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03982 K11446 - gmx:100804864 1033.48