Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03979 ATGCCCCTTCAGAAGAACTGTAATACTATGGTTGGTGTGTTGAGGTGTTTGAAACCAGTCCTTGATAATGTTGTGGATTTCAAAATCCCTTTGGATGATAATCTGTATAGAGAATGTGAAGAATTAGATGTACATGTTAACGAAGCTAGGGAGTTCGTTGAAAAATGGAGCACAAAGATGAGCAGGATCCACAGTGTTCTTCAAAGTGGGGAATTGTTAATAAAGTTACAAAACACTTCACTTAGGATTTGTCACACAATTGATAGATCCCCAAAGTCAACTTCATCTGCCTTAGTTTTGGATAATCTTCAGCACCATATACAGGAACTTCGGAGTCTTGAGAAGGAATCAACAACTGTCTATATAGAAGAAGTACTGAGAAATCAAAAGGATGATACTAAACCTAGCAATGAACGTTTAAGGGAAATTATAGAGTTACTTAAATTGACATCAAACCAGGAGCTTCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAACGCGGAAGTCAACAAAACAAAAGGGGAGTTGGATGAATTTAACCAAATTGCGAATCTTGTTTGCAATTTACGCGATTATGCTATGAAAACTAAATGCCCTGAAGTCAAAAGTGGTGTCTCAGTTCCAACATACTTTCGATGCCCTTTATCGCTCGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATATGAGAGACAGTCCATCCAAATGTGGCTTGATAATGGGCTGAATGTTTGTCCCAAGACTCACCAGAGACTAACTCACACAAATCTTATTCCTAATTATACTGTTAAAGCTATGATAACAAATTGGTGCGAAGAAAATAATGTCGAACTTCCCAATAACCCAAAGCAGAGTAATTCTACTCAGAGTTCACCCCCGACAGATCATTTACTGCATCAAGATTTTGACCGTGTCTGTAGTTTCGGGTCTTCAAATAGTAGCAACTCCAATTCAAAATCATCTCTTCAAACTGGAAATGCATTTGAGAAGCAAAAAGGTGGTGACAACTCTTCCAGAGAAAGTAGTGAATCCAATAGATGCGAAAGTGGTGAGACAGAAAAGTTTGAGCAACAATACGCTGTTCCTTCATGTAGTAACAGTAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTGTGTACCTTCAGTTTCAAAAAAGGTGCCAGGGATATCAAATAAGCATCAAAATGTGTTATTAGCTGGAGAAGTTAATTATAATGTGTTTCCTGCTTCTCCTATATATAAAGAATTTGGGAATTTTCCAACGGTACCACGAGAACAATTTCAAAGCCCTGGATCAAAAAATGCAACAATAGAGAATGACCAAAAGTACAATAACAATAATAATATTGTTATCACTAGCCTTTCAAATTCAAAAGATGATGCCAATCCTGCTTCCAACTCGGAATCAGATAAGTTGGCCACTGCATCTCATGTTAGTAAGTTGATCGAAGATCTACAGAGTCAGTCAAATGAAACGCAAACTGCTGCTGCTGAAAAATTGCGACTGCTTACCAAGTTTAACATGGAAAACCGTATCATTGTAGGGCAATGTGGGGCTATCATGCATTTACTTCCACTGCTATATTCAGAAATGAAGATTACACAAGAACATGCTGTGACAGCAATACTGAATTTGTCGATTAATGAAGACAACAAGACCTTGATCATGGAAGCAGGAGCCATAGAGCCACTTATCTATGTTTTGAAGACAGGAAATAACGGTGCCAAGGAAAATTCTGCTGCCGCTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGGCAAAAATTGGTCGTTCCGGTGCTATTAAAGAATTAGTGGAACTTCTAGCTTCTGGAACTCTTAGAGGGAAGAAAGATGCTGCTACTGCTTTATTTAACCTATCCATATTTCACGACAATAAAGCTCGTATAGTTCAAGCTGGAGCAGTGAAGTTTCTGGCTATGCTATTGGATCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTATCAACGATCCCAGAGGGTCGAGTAGAAATTGTTAGGGAAAGGGGAATACCCTTACTGGTTGAACTCGTGGAGTCGGGTTCTCATAGGGGAAAGGAAAATGCTGCATCCATTCTCTTGCAACTAAGCCTTCATAGCCGTAAGTTTTGTACCCTGGTTCTTCAAGAAGGAGCTGTACCTCCCGTAGTTGCATTATCACAGTTTGGTACGCCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTCCGTAATCAACGCACAGAAGCTCCCGGGAGAGGAAAATCATGA 2316 0.3942 MPLQKNCNTMVGVLRCLKPVLDNVVDFKIPLDDNLYRECEELDVHVNEAREFVEKWSTKMSRIHSVLQSGELLIKLQNTSLRICHTIDRSPKSTSSALVLDNLQHHIQELRSLEKESTTVYIEEVLRNQKDDTKPSNERLREIIELLKLTSNQELLKESIAVEKERLNAEVNKTKGELDEFNQIANLVCNLRDYAMKTKCPEVKSGVSVPTYFRCPLSLELMLDPVIVASGQTYERQSIQMWLDNGLNVCPKTHQRLTHTNLIPNYTVKAMITNWCEENNVELPNNPKQSNSTQSSPPTDHLLHQDFDRVCSFGSSNSSNSNSKSSLQTGNAFEKQKGGDNSSRESSESNRCESGETEKFEQQYAVPSCSNSRSESFSSSISSTDCVPSVSKKVPGISNKHQNVLLAGEVNYNVFPASPIYKEFGNFPTVPREQFQSPGSKNATIENDQKYNNNNNIVITSLSNSKDDANPASNSESDKLATASHVSKLIEDLQSQSNETQTAAAEKLRLLTKFNMENRIIVGQCGAIMHLLPLLYSEMKITQEHAVTAILNLSINEDNKTLIMEAGAIEPLIYVLKTGNNGAKENSAAALFSLSVPENNKAKIGRSGAIKELVELLASGTLRGKKDAATALFNLSIFHDNKARIVQAGAVKFLAMLLDPADGMVDKAVALLANLSTIPEGRVEIVRERGIPLLVELVESGSHRGKENAASILLQLSLHSRKFCTLVLQEGAVPPVVALSQFGTPRAKEKAQQLLSHFRNQRTEAPGRGKS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03979 771 Coils Coil 157 184 - -
Trre13g03979 771 SMART Ubox_2 212 275 IPR003613 GO:0004842|GO:0016567
Trre13g03979 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 283 IPR013083 -
Trre13g03979 771 MobiDBLite consensus disorder prediction 314 337 - -
Trre13g03979 771 Pfam Armadillo/beta-catenin-like repeat 517 554 IPR000225 GO:0005515
Trre13g03979 771 Pfam Armadillo/beta-catenin-like repeat 599 636 IPR000225 GO:0005515
Trre13g03979 771 MobiDBLite consensus disorder prediction 282 301 - -
Trre13g03979 771 FunFam RING-type E3 ubiquitin transferase 206 282 - -
Trre13g03979 771 SUPERFAMILY RING/U-box 207 285 - -
Trre13g03979 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 608 650 IPR000225 GO:0005515
Trre13g03979 771 SUPERFAMILY ARM repeat 485 758 IPR016024 -
Trre13g03979 771 ProSiteProfiles U-box domain profile. 208 282 IPR003613 GO:0004842|GO:0016567
Trre13g03979 771 MobiDBLite consensus disorder prediction 338 358 - -
Trre13g03979 771 Gene3D - 561 765 IPR011989 -
Trre13g03979 771 MobiDBLite consensus disorder prediction 314 373 - -
Trre13g03979 771 SMART arm_5 515 555 IPR000225 GO:0005515
Trre13g03979 771 SMART arm_5 556 596 IPR000225 GO:0005515
Trre13g03979 771 SMART arm_5 678 718 IPR000225 GO:0005515
Trre13g03979 771 SMART arm_5 597 637 IPR000225 GO:0005515
Trre13g03979 771 SMART arm_5 638 677 IPR000225 GO:0005515
Trre13g03979 771 PANTHER U BOX DOMAIN-CONTAINING 2 759 - -
Trre13g03979 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 649 690 IPR000225 GO:0005515
Trre13g03979 771 Gene3D - 439 560 IPR011989 -
Trre13g03979 771 Pfam U-box domain 209 280 IPR003613 GO:0004842|GO:0016567
Trre13g03979 771 CDD RING-Ubox_PUB 210 262 IPR045210 -
Trre13g03979 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515
Trre13g03979 771 FunFam RING-type E3 ubiquitin transferase 469 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03979 Trre-Chr13 47937579 47941365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03979 482 771 U-box Gene Family AT3G54790 69.759 1.20e-124 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03979 - - gmx:100804684 1064.68