Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03974 ATGCTAGAAGGAGCCATGTCGAGGATATGTGTGAAGAATCTCCCTAAACATGTTGTGGAGGATCGACCAAGAGAAATAGTTTCTCAGAAAGGAGAAATAACTGATGTCAATCTGCGTACCATAAACGGGAAAAGTCGCCAATTTGCCTATATTGGCTTTCGTACAGACCACGTATTTTCTATGTTACTGATATCTTTCAATGATTCTGTTGTTTCAATTGATCTTAATATTTTTATACTTATTGTTGGTTTTATCATTTTATTGTTATTCTGTTGCAGGGAGGTGGAACTGAAAGAGCATTTCAGTCAGTTTGGTGATGTCTTACAGGTTCATTTAGTTGTTGATCGGGAAACAAATCGACCCAAAGAAATAGCTTATATTCATTTCTCAGATCCAGATTTTGCAGCCAGGGCGTTAAAAGAGTCGAATAATTCAATCTTTCAAGGGAGATTATTACATGTTATGCCAGCTATACCAGGACTATTCAAACAATGA 495 0.3657 MLEGAMSRICVKNLPKHVVEDRPREIVSQKGEITDVNLRTINGKSRQFAYIGFRTDHVFSMLLISFNDSVVSIDLNIFILIVGFIILLLFCCREVELKEHFSQFGDVLQVHLVVDRETNRPKEIAYIHFSDPDFAARALKESNNSIFQGRLLHVMPAIPGLFKQ 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03974 164 Gene3D - 5 68 IPR012677 -
Trre13g03974 164 SMART rrm1_1 79 155 IPR000504 GO:0003723
Trre13g03974 164 SMART rrm1_1 8 74 IPR000504 GO:0003723
Trre13g03974 164 Gene3D - 84 161 IPR012677 -
Trre13g03974 164 SUPERFAMILY RNA-binding domain, RBD 92 160 IPR035979 GO:0003676
Trre13g03974 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 55 IPR000504 GO:0003723
Trre13g03974 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 153 IPR000504 GO:0003723
Trre13g03974 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 159 IPR000504 GO:0003723
Trre13g03974 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 76 IPR000504 GO:0003723
Trre13g03974 164 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 92 156 - -
Trre13g03974 164 SUPERFAMILY RNA-binding domain, RBD 7 68 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03974 Trre-Chr13 47892144 47893741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03974 96 163 Eukaryotic Initiation Factors Gene Family AT1G49760 35.714 6.27e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03974 K14787 - psat:127129455 110.538