Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03963 ATGGGGTTGAAGAAAGGTCCATGGACTCAAGAAGAAGATAGAATTCTCATCAATCACATAAACATTCATGGCCATTCCAATTGGCGTGCTCTTCCAAAACAAGCTGGGTTGTTAAGATGTGGTAAGAGTTGTAGATTGAGATGGGCAAATTATTTGAAACCAGATATCAAACGGGGTAATTTTACTAAAGAAGAAGAGGATGCAATAATCAATTTGCACCAAATGTTGGGAAACAGATGGTCAACTATAGCAGCAAGATTACCAGGACGAACGGACAATGAAATAAAAAATGTATGGCACACCCACTTGAAGAAAAGGCTGCCACAAAACCAACAAGGCAACAACAATAGCCCAAAAAGAAATAAGAAACAAACCAATTTGGACTTTGAAGCCTCCAAATCAGACCAAGATATCAAACAAGAACAAAATAATGTTGATGATATGCCACAATGTTCTAGTGACATGTCATACCATAATAATAGTAGCATTGCTGCTACTAATGATGAAAATAATAATAATCTTGACATGTTCATAAATAATGATAAAGATGATGTTGATTCAGCAGAAAATAATCTTGCATTGGATGAAGATTTTTGGTCGGAAGTTTTGTCATCTGATAATTCTAGCAATGAGACAAGTTGTGGTGTTATGGATTTTGGTGCTGATAATTATCAATTTCAAGCTTCATTCTCTCCATTAGGGACTGAAGAAGGAGTGTTTAATTCAAGTTCATTGAGTTTATGTCAAGATATGGATTTTTGGCATGATGTTTATGCAAGAGCTGAGGAAATTACTGAGTTACTTGAATTGTGA 813 0.353 MGLKKGPWTQEEDRILINHINIHGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQQGNNNSPKRNKKQTNLDFEASKSDQDIKQEQNNVDDMPQCSSDMSYHNNSSIAATNDENNNNLDMFINNDKDDVDSAENNLALDEDFWSEVLSSDNSSNETSCGVMDFGADNYQFQASFSPLGTEEGVFNSSSLSLCQDMDFWHDVYARAEEITELLEL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03963 270 MobiDBLite consensus disorder prediction 104 122 - -
Trre13g03963 270 CDD SANT 60 103 IPR001005 -
Trre13g03963 270 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Trre13g03963 270 CDD SANT 7 52 IPR001005 -
Trre13g03963 270 SUPERFAMILY Homeodomain-like 1 99 IPR009057 -
Trre13g03963 270 Gene3D - 2 58 - -
Trre13g03963 270 MobiDBLite consensus disorder prediction 143 171 - -
Trre13g03963 270 FunFam Transcription factor MYB15 59 136 - -
Trre13g03963 270 Gene3D - 60 144 - -
Trre13g03963 270 MobiDBLite consensus disorder prediction 131 171 - -
Trre13g03963 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Trre13g03963 270 FunFam MYB-related transcription factor 4 57 - -
Trre13g03963 270 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Trre13g03963 270 SMART sant 57 105 IPR001005 -
Trre13g03963 270 SMART sant 4 54 IPR001005 -
Trre13g03963 270 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Trre13g03963 270 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Trre13g03963 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Trre13g03963 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Trre13g03963 270 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03963 Trre-Chr13 47843570 47844723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03963 1 206 MYB Transcription Factor Family AT1G06180 57.005 1.09e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g03963 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03963 K09422 - gmx:100775603 336.65