Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03962 ATGGTGAGAGCTCCATGTTGTGAAAAAATGGGGTTGAAGAAAGGTCCATGGACTCAAGAAGAAGATAGAATTCTCATCAATCACATAAACATTCATGGCCATTCCAATTGGCGTGCTCTTCCAAAACAAGCTGGGTTGTTAAGATGTGGTAAGAGTTGTAGATTGAGATGGGCAAATTATTTGAAACCAGATATCAAACGGGGTAATTTTACTAAAGAAGAAGAGGATGCAATAATCAATTTGCACCAAATGTTGGGAAACAGATGGTCAACTATAGCAGCAAGATTACCAGGACGAACGGACAATGAAATAAAAAATGTATGGCACACCCACTTGAAGAAAAGGCTGCCACAAAACCAACAAGGCAACAACAATAGCCCAAAAAGAAATAAGAAACAAACCAATTTGGACTTTGAAGCCTCCAAATCAGACCAAGATATCAAACAAGAACAAAATAATGTTGATGATATGCCACAATGTTCTAGTGACATGTCATACCATAATAATAGTAGCATTGCTGCTACTAATGATGAAAATAATAATAATCTTGACATGTTCATAAATAATGATAAAGATGATGTTGATTCAGCAGAAAATAATCTTGCATTGGATGAAGATTTTTGGTCGGAAGTTTTGTCATCTGATAATTCTAGCAATGAGACAAGTTGTGGTGTTATGGATTTTGGTGCTGATAATTATCAATTTCAAGCTTCATTCTCTCCATTAGGGACTGAAGAAGGAGTGTTTAATTCAAGTTCATTGAGTTTATGTCAAGATATGGATTTTTGGCATGATGTTTATGCAAGAGCTGAGGAAATTACTGAGTTACTTGAATTGTGA 840 0.3548 MVRAPCCEKMGLKKGPWTQEEDRILINHINIHGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQQGNNNSPKRNKKQTNLDFEASKSDQDIKQEQNNVDDMPQCSSDMSYHNNSSIAATNDENNNNLDMFINNDKDDVDSAENNLALDEDFWSEVLSSDNSSNETSCGVMDFGADNYQFQASFSPLGTEEGVFNSSSLSLCQDMDFWHDVYARAEEITELLEL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03962 279 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre13g03962 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g03962 279 CDD SANT 69 112 IPR001005 -
Trre13g03962 279 FunFam MYB-related transcription factor 13 66 - -
Trre13g03962 279 Gene3D - 11 67 - -
Trre13g03962 279 MobiDBLite consensus disorder prediction 113 131 - -
Trre13g03962 279 CDD SANT 16 61 IPR001005 -
Trre13g03962 279 SMART sant 66 114 IPR001005 -
Trre13g03962 279 SMART sant 13 63 IPR001005 -
Trre13g03962 279 MobiDBLite consensus disorder prediction 113 132 - -
Trre13g03962 279 MobiDBLite consensus disorder prediction 152 180 - -
Trre13g03962 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre13g03962 279 MobiDBLite consensus disorder prediction 140 180 - -
Trre13g03962 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre13g03962 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre13g03962 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g03962 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Trre13g03962 279 FunFam Transcription factor MYB15 68 145 - -
Trre13g03962 279 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Trre13g03962 279 Gene3D - 69 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03962 Trre-Chr13 47843543 47844723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03962 1 279 MYB Transcription Factor Family AT2G31180 49.648 4.73e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g03962 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03962 K09422 - gmx:100775603 354.369