Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03959 ATGGCAAAGGAACAAATGCAAGTGCTAAATGCACTTGATGTGGCGAAAACACAATGGTATCATTTCACTGCAATCATTATAGCTGGTATGGGATTCTTCACTGATGCATATGATCTGTTCTGTGTATCGCTTGTTACAAAGTTGCTCGGCCGCATATACTACCACGTTGAGGGTGCGGCGAAGCCTGGTTCATTGCCTCCCAATGTATCGGCTGCTGTCAATGGAGTTGCTTTCTGTGGTACACTTACAGGACAACTCTTCTTTGGCTGGCTTGGCGATAAGTTGGGAAGGAAAAAAGTGTATGGCATGACCCTCATGATGATGGTAATCTGCTCCATCGGCTCTGGTCTTTCTTTTGGACACAGTCCAAAATCGGTCATGATAACTCTATGTTTCTTCCGCTTTTGGCTTGGGTTTGGCATTGGTGGTGACTACCCGCTTTCGGCTACTATAATGTCAGAGTATTCTAATAAGAAGACTCGTGGTGCCTTTATTGCTGCCGTCTTTGCCATGCAAGGTTTTGGAATTTTGGCAGGTGGTATATTTGCAATCATAATTTCAGCCACATTCAACGCTTTGTTTGACGCACCATCTTATGAGGTTGATCCAGTTCGGTCAACTGTTCCACAAGCAGATTACATTTGGAGGATAATTGTGATGGTTGGAGCATTACCAGCTGCAATGACTTACTACTCGCGGACGAAGATGCCAGAAACTGCTCGTTACACCGCTCTAGTTGCTAAGAACACGGCAAAGGCTGCAGCAGATATGTCTAAGGTTTTGCAGGTCGAGATTGAAGCCGAACCAGAACAAGAGAAGGCAAAATCATATGGCTTGTTCTCAAAGGAGTTTCTCCATCGCCATGGATTACATCTACTCGGTACAGCAAGTACTTGGTTCTTGCTCGACATAGCATTTTACAGCCAAAATCTATTCCAGAAGGATATCTTCAGCGCAGTTGGTTGGATACCACCTGCAAAAACCATGAATGCAATTCAGGAGGTTTACAAAATTGCGAGAGCTCAAACGCTTATTGCTCTATGCAGTACAGTTCCAGGCTACTGGTTTACGGTGGCTTTCATTGACAGAATCGGGAGATTTAAAATTCAGTTGATGGGATTTTTCTTTATGACCGTCTTCATGTTTGCTCTTGCCATTCCTTATGATTACTGGACACTTAAGGATCACCGAATAGGATTCGTGGCATTGTATTCGTTGACCTTCTTCTTTGCCAATTTTGGTCCCAATGCTACAACATTTGTTGTACCAGCGGAGATTTTTCCTGCTAGATTCCGGTCTACCTGCCATGGAATATCATCCGCATCAGGGAAACTTGGGGCTATGGTTGGCGCATTTGGGTTCTTATACTTAGCACAGAACAAGGACAAGACCAAAACAGATGCAGGGTACCCTGCAGGTATTGGTGTGAAGAACTCGCTTCTTCTCTTAGGTGTGGTTAACATTTTGGGATTCCTTTTTACTTTCTTGGTGCCCGAGGCAAAAGGAAAATCTTTGGAGGAGATGTCAGGTGAGAACGAAGAAGAAGCCGAAACCAACGTAGAGTTGCAGCAATCCCATTCTCATAACAGAACTGTTCCACTTGTTTAG 1608 0.4422 MAKEQMQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCVSLVTKLLGRIYYHVEGAAKPGSLPPNVSAAVNGVAFCGTLTGQLFFGWLGDKLGRKKVYGMTLMMMVICSIGSGLSFGHSPKSVMITLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILAGGIFAIIISATFNALFDAPSYEVDPVRSTVPQADYIWRIIVMVGALPAAMTYYSRTKMPETARYTALVAKNTAKAAADMSKVLQVEIEAEPEQEKAKSYGLFSKEFLHRHGLHLLGTASTWFLLDIAFYSQNLFQKDIFSAVGWIPPAKTMNAIQEVYKIARAQTLIALCSTVPGYWFTVAFIDRIGRFKIQLMGFFFMTVFMFALAIPYDYWTLKDHRIGFVALYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMVGAFGFLYLAQNKDKTKTDAGYPAGIGVKNSLLLLGVVNILGFLFTFLVPEAKGKSLEEMSGENEEEAETNVELQQSHSHNRTVPLV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03959 535 Pfam Sugar (and other) transporter 26 509 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre13g03959 535 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 502 IPR020846 GO:0022857
Trre13g03959 535 SUPERFAMILY MFS general substrate transporter 12 509 IPR036259 -
Trre13g03959 535 Coils Coil 505 525 - -
Trre13g03959 535 NCBIfam phosphate:H+ symporter 11 511 IPR004738 GO:0005315|GO:0006817|GO:0016020
Trre13g03959 535 FunFam Inorganic phosphate transporter 1-6 20 523 - -
Trre13g03959 535 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 20 500 - -
Trre13g03959 535 Gene3D MFS general substrate transporter like domains 20 525 IPR036259 -
Trre13g03959 535 CDD MFS_PhT 25 501 - -
Trre13g03959 535 MobiDBLite consensus disorder prediction 506 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03959 Trre-Chr13 47824986 47826593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03959 1 517 Inorganic Solute Cotransporters AT3G54700 84.971 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03959 K08176 - gmx:100819445 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03959 13 47824986 47826593 Trre13g03959 13 47824986 47826593 ECH
Trre1g02842 1 23563619 23565235 Trre13g03959 13 47824986 47826593 PCT