Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03957 ATGGAGGGAGATAGAAATAATAATGGAGAGGTAAGATATAGAGGAATTCGTAAAAGACCATGGGGTAAATTTGCAGCTGAAATTCGTGATCCAACAAGAAAAGGTTCTCGTATTTGGCTTGGAACATTTGATACAGCTGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAAAGCTATTCTTAATTTCCCAAATGATTTTGCTCATTCTAGTACTTCAACAACCTCAAATAATACATTGTCTAATTCTTCTTCCATAAATTCCTATCAACAACAACAACAAGAAAGTCAAGGTGGTGATGATACTTTTGATCAATTGGCTTGCTTTGATAATAAGTTGTTGGAAGAACTTCTTGATCAGGTGAAAGATGATGGTACAGGTAGCTCAAGAAATTGA 414 0.3599 MEGDRNNNGEVRYRGIRKRPWGKFAAEIRDPTRKGSRIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNDFAHSSTSTTSNNTLSNSSSINSYQQQQQESQGGDDTFDQLACFDNKLLEELLDQVKDDGTGSSRN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03957 137 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Trre13g03957 137 FunFam Ethylene-responsive transcription factor 2 11 71 - -
Trre13g03957 137 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Trre13g03957 137 PANTHER DNA-BINDING DOMAIN 10 110 IPR044808 GO:0003700|GO:0009873
Trre13g03957 137 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Trre13g03957 137 MobiDBLite consensus disorder prediction 71 107 - -
Trre13g03957 137 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Trre13g03957 137 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Trre13g03957 137 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Trre13g03957 137 MobiDBLite consensus disorder prediction 71 110 - -
Trre13g03957 137 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Trre13g03957 137 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03957 Trre-Chr13 47790971 47791384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03957 7 125 AP2-EREBP Transcription Factor Family AT3G23230 50.394 9.97e-36 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g03957 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03957 - - gmx:100778998 146.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03957 13 47790971 47791384 Trre13g03957 13 47790971 47791384 ECH
Trre13g03957 13 47790971 47791384 Trre1g02844 1 23606695 23607159 PCT