Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03956 ATGGATTTTTACTCTTCCGCTGATTTATTTGATATTTCATGGGAAGACATGTTTTTTTTCAACAACATCGACTCTGATTCTTCATCCTCTAGTGGTGAAATGGATTTACAAAAACCCGCATACAATATTACATACAATGGGCACATCAAAGAAGAAAATCCACCACCAGCGGTATCAATTGCTCCAAAAACCCTAAATCCACAACCGAGACCATTTAAACGAGAGAAGAGACTCTATAGAGGAGTGAGGACACGACCATGGGGAAAATATGCCGCAGAGATAAGGGACACAACAAGAAATGGTGTTCGTGTGTGGATTGGAACATTTGACACGCCTGAAGCAGCCGCTTTAGCTTATGACCAAGCAGCTTTCTTAACACGAGGATGTAGGGCAATCCTTAATTTCTCCGAACATGTTGTGAAGGAGTCTCTTCAAAACATGAATTTGAAGACATTGTTAAATCACGGTAGCTCACCCTTGTTGGAACTTAAAAGGATGCATGTCTTGAGAACAAGATCTAAGACTTGCACTAAAAAGGTTAAAAGGGATTCCAAGAATGGAGTGATGAAAAATGCTCTAAATGTGTTGGTGTTGGAAGATATGGGTTCTGAATATCTAGAACAACTTTTGATGAGTTCTATTTGA 645 0.3938 MDFYSSADLFDISWEDMFFFNNIDSDSSSSSGEMDLQKPAYNITYNGHIKEENPPPAVSIAPKTLNPQPRPFKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGCRAILNFSEHVVKESLQNMNLKTLLNHGSSPLLELKRMHVLRTRSKTCTKKVKRDSKNGVMKNALNVLVLEDMGSEYLEQLLMSSI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03956 214 PANTHER DNA-BINDING DOMAIN 64 210 IPR044808 GO:0003700|GO:0009873
Trre13g03956 214 SUPERFAMILY DNA-binding domain 78 137 IPR016177 GO:0003677
Trre13g03956 214 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Trre13g03956 214 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Trre13g03956 214 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
Trre13g03956 214 Pfam AP2 domain 79 124 IPR001471 GO:0003700|GO:0006355
Trre13g03956 214 CDD AP2 79 138 IPR001471 GO:0003700|GO:0006355
Trre13g03956 214 FunFam Ethylene-responsive transcription factor 2 77 137 - -
Trre13g03956 214 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Trre13g03956 214 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03956 Trre-Chr13 47777399 47778043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03956 73 213 AP2-EREBP Transcription Factor Family AT3G23240 54.225 1.67e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g03956 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03956 K14516 - gmx:100818907 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03956 13 47777399 47778043 Trre13g03956 13 47777399 47778043 ECH
Trre13g03956 13 47777399 47778043 Trre1g01620 1 12417847 12418494 PCT
Trre1g02854 1 23756166 23756840 Trre13g03956 13 47777399 47778043 PCT