Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03952 ATGATGATTTTGTTATACAACAGGTCCAGGATAGTTGTGAAAAATCTCCCAGTAAATGAATATATTGGGAAGGATGAACTAAGAGAGATATTTTCTCAGAAAGGAGAAGTCACTCATGTCAGACTTTTGCATAACAGAACTGGCGGGTTTGCTTTCATTGAATTTCGTCAAGAACTTGAGGCTCAAAAAGCTATTGAATATTTCAACGGATGTTACATTAACAAGTGTAGAATTACTTGTGAGGTGCCTACTGGCTTGGAACTAAAGCCCCCAAAATATACTACTATTTTTGTTGCCAATGCAATGAGTTACCCGATCCCATCAAATCCGCCAACAATTAAAACAGTTTTTGATCCCTATGAAATCGTTGTCTCTGATCTGCCAGTGCCATTGACAGCCATTATGAAAGATCTAGTAGAGTACTTCAGCTGGTTTGGTACTATCACAGAAGTTCGTCCAATTTCTGATAATCATAGTTTTCATGGAATTGCTTTTATTCGTTTCTCTTCTCCAGAATCTGCATCCAGGGCAATCGAAGTGGCAAATAATTCATAA 555 0.3766 MMILLYNRSRIVVKNLPVNEYIGKDELREIFSQKGEVTHVRLLHNRTGGFAFIEFRQELEAQKAIEYFNGCYINKCRITCEVPTGLELKPPKYTTIFVANAMSYPIPSNPPTIKTVFDPYEIVVSDLPVPLTAIMKDLVEYFSWFGTITEVRPISDNHSFHGIAFIRFSSPESASRAIEVANNS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03952 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 85 IPR000504 GO:0003723
Trre13g03952 184 Gene3D - 87 184 IPR012677 -
Trre13g03952 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 184 IPR000504 GO:0003723
Trre13g03952 184 Gene3D - 6 86 IPR012677 -
Trre13g03952 184 SMART rrm1_1 10 81 IPR000504 GO:0003723
Trre13g03952 184 SMART rrm1_1 121 184 IPR000504 GO:0003723
Trre13g03952 184 CDD RRM_SF 122 184 - -
Trre13g03952 184 SUPERFAMILY RNA-binding domain, RBD 9 182 IPR035979 GO:0003676
Trre13g03952 184 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 13 82 - -
Trre13g03952 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 78 IPR000504 GO:0003723
Trre13g03952 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03952 Trre-Chr13 47747240 47748744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03952 11 182 Eukaryotic Initiation Factors Gene Family AT4G34110 26.136 2.59e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03952 K14787 - rcu:8286308 89.7373