Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03950 ATGGCTGGTGAGAGGTTTTGGAAGAATGAAGAAGACAAGGCTATGTTGGAATCTGTATTGGGTACTGAAGCTGTTGCTTTTTTTAACTCAGCTGTTTCCAAACATGTTTTTTCCGATGTTATTGTTCCGCCTAATCTTGATTTGAGTATTCACAAAAGGTTGTGTCACATTGTTAAGGGTTCCAAGTGGAACTACTCGATTTTATGGCAGGTTGCTGGTTTGAAATCCGGTGGTTATGTGTTGAAATACGGCGAGGGACATTGTCAGGATCCCATAGGGGGTCCAAGGAATGATCAGGAAAGGGAGAGGGATGATGTTAGGAGGAAGGTGTTGGGGAAGATTCATGCTTGCTGGGGTGGATCTAATTCAATTGAGAATGTTTATAAGAAATTGGATACTGTCTCGGATTTGTATATGCTTTATTTGACCTCTGTTTACTATGTGTTTGGTTTTAATTCTCAGTATGGTCCCGGAAGTTCTTTTAAGTGTGCTAAACCGAATTGGTCTTCTGATGCTGGTAGTTGTTTAACTCAGTATGAGTCGAGGTCGTTTCTGGCTAAATCGGCTGGTTTTCAAACTGTTGTTTTTGTACCTCTCAAGGCTGGGGTTATCGAGCTTGGTTCAATGGAGATGGTGGCTGAAGATTTGGGTTTTTTGGATATGGTCAAGTCAGCATTTGGAGAATCTTCTTCTGGACAGGCTAAGGCAGCACCGAAGATTTTTGGGCACGAGTTAAGCTTAGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCTAAGATGGAAGATGATTCTGGTTTCACTTCCGACTCTTATGAAGTACAAGCGCTTGGGGCCAACCATGCTTATGGTAATTCTTCCAATGGAGGTGTAGGAGATAGTAATGATGCAAAAATGTTCCCTCAGTTAACTCAAATGGTTCCTGGGAATTTTACTTCTCAAGCAAGAGTTTCTTCTTCTATTGATTTGGGTAATGAAGACTCATCCTCGCCTCTCGGAGACGAACGGAAGCCTAGAAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCATGTTGAAGCAGAGAGGCAAAGACGGGAGAAACTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGTGATGCTATAACTCATATCACTGATCTCCAGAAGAAGATCAAGCTGTTGGAAACCGAAAAAAGCATGGTTAACAATAAGGGCCAGCAGTTATCATTGCAAGATATCGATTTTCAGGCTAGACAGGATGACGCGGTTGTGCGAGTGAGCTGCCCCTTGGATACTCACCCGGTTTCTGGAATTGTTAAAGTATTCAAAGAGCATCAAATTGCAGCTCTAGAGGCCAATGTTTCAACTGCACAGGATAAGGTAATTCATACATTCTCTATCAGAACTCAAGGAGGGGAAGCAGCTGCTGTACAGTTGAAAGAAAAGCTCGAAGCATCTTTAGCCAAAAATTAA 1515 0.4224 MAGERFWKNEEDKAMLESVLGTEAVAFFNSAVSKHVFSDVIVPPNLDLSIHKRLCHIVKGSKWNYSILWQVAGLKSGGYVLKYGEGHCQDPIGGPRNDQERERDDVRRKVLGKIHACWGGSNSIENVYKKLDTVSDLYMLYLTSVYYVFGFNSQYGPGSSFKCAKPNWSSDAGSCLTQYESRSFLAKSAGFQTVVFVPLKAGVIELGSMEMVAEDLGFLDMVKSAFGESSSGQAKAAPKIFGHELSLGDTKSQSITISFSPKMEDDSGFTSDSYEVQALGANHAYGNSSNGGVGDSNDAKMFPQLTQMVPGNFTSQARVSSSIDLGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKSMVNNKGQQLSLQDIDFQARQDDAVVRVSCPLDTHPVSGIVKVFKEHQIAALEANVSTAQDKVIHTFSIRTQGGEAAAVQLKEKLEASLAKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03950 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 424 IPR036638 GO:0046983
Trre13g03950 504 MobiDBLite consensus disorder prediction 320 363 - -
Trre13g03950 504 FunFam Transcription factor bHLH13 345 419 - -
Trre13g03950 504 CDD bHLH_AtAIB_like 349 412 - -
Trre13g03950 504 PANTHER MYC 46 500 IPR045084 GO:0003700|GO:0006355
Trre13g03950 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Trre13g03950 504 MobiDBLite consensus disorder prediction 331 363 - -
Trre13g03950 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Trre13g03950 504 Coils Coil 398 418 - -
Trre13g03950 504 Gene3D - 345 418 IPR036638 GO:0046983
Trre13g03950 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Trre13g03950 504 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03950 Trre-Chr13 47704737 47706251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03950 3 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.337 2.72e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g03950 bHLH-MYC_N 2.7e-36 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03950 - - gmx:100782107 684.1