Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03947 ATGGCTTCTGAAGATCCCACCGTCACCGTCGAAGAAACCGCCGCCGTCGACGAAACTGCCGCCGTCGACACTTTACCTGCCGTCGTCAATGAGTCTGACGAACCTGCTGCTGATGATACCACCGCCGCCGCAGCCACCGCCGCCAAGCCTAAGAAGGCCGCCAAGGAGCCTAAGCCTAGGAAGCCTGCTGCTCCTCGCACTCATCCTCCTTACGAAGAGATGGTGAAGGATGCGATTGTTACTTTGAAGGAGAAAAACGGTTCGAGTCAGTATGCGATTGCGAAGTTCATTGAAGAGAAACATAATCAGCTTCCATCGAACTTCAAGAAGATTTTGCTTGTTCAGATCAAGAAGCTTGTTGCTTCTGATAAGCTTGTTAAGGTTAAAGGATCTTACAAATTACCTCCTAAGTCATCATCTGGTGCTAAACCAGCTGCTGTTAAGAAGCCTGCTGCTGCTAAACCCAAGCCCAAGCCCAAGGCTAAGCCTGCTGCTAAGCCCAAGCCTGCTGCTGCTGCTAGTACTAAGAAAGGTAAACCTGCTGCTGCTAAGAAAGCTAAGCCAGCTGCTAAAGCTAAGCCAGCTGCTAAGGCTAAGCCGGCTGCTGCTAAACGTAAGCCTGTTGCTGCTGCGAAGCCGGCTCCGGCTAAGGCGAAACCGGCTCCGGCTAAGGCGAAACCGGCTCCCGCTAAGGCCAAACCGGCTCCTGCTAAGGCTAAGCCTGCTGCGGCAAAGAAGCCGGCTGCCAGACCAGCGAAGGCTTCTCGGACTTCGACCAGGACATCTCCTGGGAGAAGAGCTGCTGCGCCAAAGCCTGCTGTGGCTAAGAAGGTGGCAACACCGGTGAAGAAGGCGGCTCCGGCGAAGAAGGCGGCTCCGGTGAAGAAGGCAGCTCCTGCGAAGAAGGTGGCGGCAGCGAAATCGCCAGCGAAGAAGGCACCTGCTAAGAGAGGGGGTAGAAAGTGA 966 0.5497 MASEDPTVTVEETAAVDETAAVDTLPAVVNESDEPAADDTTAAAATAAKPKKAAKEPKPRKPAAPRTHPPYEEMVKDAIVTLKEKNGSSQYAIAKFIEEKHNQLPSNFKKILLVQIKKLVASDKLVKVKGSYKLPPKSSSGAKPAAVKKPAAAKPKPKPKAKPAAKPKPAAAASTKKGKPAAAKKAKPAAKAKPAAKAKPAAAKRKPVAAAKPAPAKAKPAPAKAKPAPAKAKPAPAKAKPAAAKKPAARPAKASRTSTRTSPGRRAAAPKPAVAKKVATPVKKAAPAKKAAPVKKAAPAKKVAAAKSPAKKAPAKRGGRK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03947 321 MobiDBLite consensus disorder prediction 51 77 - -
Trre13g03947 321 Pfam linker histone H1 and H5 family 68 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre13g03947 321 CDD H15 65 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre13g03947 321 SMART h15plus2 65 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre13g03947 321 MobiDBLite consensus disorder prediction 127 321 - -
Trre13g03947 321 SUPERFAMILY "Winged helix" DNA-binding domain 65 146 IPR036390 -
Trre13g03947 321 FunFam Histone H1 62 147 - -
Trre13g03947 321 MobiDBLite consensus disorder prediction 1 77 - -
Trre13g03947 321 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 67 136 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre13g03947 321 Gene3D - 63 149 IPR036388 -
Trre13g03947 321 PRINTS Histone H5 signature 54 75 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre13g03947 321 PRINTS Histone H5 signature 156 170 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre13g03947 321 PRINTS Histone H5 signature 209 228 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre13g03947 321 PRINTS Histone H5 signature 187 204 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre13g03947 321 PRINTS Histone H5 signature 81 98 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre13g03947 321 PANTHER HISTONE H1 43 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03947 Trre-Chr13 47666610 47667779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03947 69 135 Single Myb Histone (SMH) Gene Family AT1G72740 37.313 7.61e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03947 K11275 - tpra:123889087 168.318