Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03945 ATGCTTCCCACCGATTCTCCGGCACCGTCCAAACATTTCAGAGGAGTTCGTAAACGTCCATGGGGCCGTTTCGCCGCCGAGATCAGAGATCCATGGAAAAAAACTCGCAAATGGCTCGGCACCTTCGACACAGCCGAAGAAGCCGCAAGAGCTTACGACGACGCCGCTAGAGCTCTCCGTGGACCAAAAGCGAAAACTAACTTCGCCTACTTCGTCGCTCCTACTATTCTTCCACTTCCTCAGCCTCATAACGGAAGTAATGGAAGACCTGTCGAGTTTTGGGGTCCGCCGGTTTATTTCACCGCCGGTGCTCCGGTGAGGTCGGAGTATAAGGGTTATAAGTTGGAGAATATTGTGGTGAGTAAGGAAGAGGTGGAAGAGAAGAAGCCGTTTTTGTTTGATCTTAACTTGCCGGCGCCGCTTGTTTGA 429 0.5175 MLPTDSPAPSKHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGPKAKTNFAYFVAPTILPLPQPHNGSNGRPVEFWGPPVYFTAGAPVRSEYKGYKLENIVVSKEEVEEKKPFLFDLNLPAPLV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03945 142 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Trre13g03945 142 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Trre13g03945 142 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Trre13g03945 142 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Trre13g03945 142 FunFam Ethylene-responsive transcription factor 2 11 70 - -
Trre13g03945 142 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Trre13g03945 142 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Trre13g03945 142 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700|GO:0006355
Trre13g03945 142 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 86 - -
Trre13g03945 142 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03945 Trre-Chr13 47642704 47643132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03945 12 68 AP2-EREBP Transcription Factor Family AT1G50640 89.474 4.55e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre13g03945 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03945 K09286 - gmx:100816599 183.341