Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03937 ATGTCGAATGAAGTTGCAAAAGTTAATAGAAAAACAATTGCAGCATGCATGATTTGCCCACTTTGTAACAACTTCTTCAAACAAGCTACAACTATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGCATTTATGACAAAATTACTGATGAAGATTTGGAATGTTGTCCAGTATGCAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAAGCCAGATCACAGTAAGCTAAACATAAGGTACATAGTTTTCCCTTCAAAGCGAAGAGAGGTGAAAGAACCTGAAGTTGTCGCCGCTTCAGTAGAGTCAGTGCCAGTGCCAGCTAAAAGAAAAGAGAGATCTCTTTCATCCTTGGTGGTCAACACACCAAGAGTATCTGCACAATCAACGAAGACAGGAAGAAGAACGAAACCTACAAGAAAAGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGTCAGTTAAACATGAGGACGAATTATTGGACAACCGTCCCAAGAGTTCAAGCTCGCCTGAAACTTCAAATGAGCTGCGTCAAAATAATGGACAGAGTGAGGGTAGTCAATCCACACCAAATAAAGAAGCGGAGAACGGTGCCGAATCATGGGATGCAAAGATGGATCTTTGGAAGCCTTTGAATGATTTAGTAGAGATCGCAAGCAGGACTAAGTCTTTCAAGTCTAATACGCAACGGTCTGATGCCACACCAGAACATGTTCAAGTAAACGAGAGTGACTCTCTAGTGCAGAAAATCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGAGTAGCCCTTTTCCAGTTTGTTCTGATACAGCAAAACCAAATAAATTGCGTAGAGTACGCAGGAAAAAGGAACCATTTGGAGAATTAGGTGTATCTCCCCAAGCTGTGGTGGATTCTACCAGCAATAACCACTTGAAGAGTGGTCCAATTTGGTTCTCCTTAATAGCTTCTGAAAACCAGGAAGGAGAAGCTCCCTTGCCAAATATTCCTGCAATCTATTTGAGAATAAAGGATGGAAGTGCACCTGTCTCGTGTATCCAAAAATACCTAATGCAGAAACTCAATCTGACCAGTGAAACAGAGATTGAGATTAAGTGTATGGGTCAACCAGTGCTCCCTACACTGAAACTACACAATTTGGTTGAGTTATGGCTTGATTCAGCAGCATCTGCATCCGACCGAATTCCAGCAATTATCGGGTCGTCAGCAAAGGATTTTGTCATGGTTCTCGCTTATTCTCAGAAGGCTCCGCACCCTTGA 1287 0.4165 MSNEVAKVNRKTIAACMICPLCNNFFKQATTISECLHTFCRKCIYDKITDEDLECCPVCNIDLGCVPLEKLKPDHSKLNIRYIVFPSKRREVKEPEVVAASVESVPVPAKRKERSLSSLVVNTPRVSAQSTKTGRRTKPTRKASSLRSSSFSIEKSVKHEDELLDNRPKSSSSPETSNELRQNNGQSEGSQSTPNKEAENGAESWDAKMDLWKPLNDLVEIASRTKSFKSNTQRSDATPEHVQVNESDSLVQKIKNKENKRKAKVEDEKSSPFPVCSDTAKPNKLRRVRRKKEPFGELGVSPQAVVDSTSNNHLKSGPIWFSLIASENQEGEAPLPNIPAIYLRIKDGSAPVSCIQKYLMQKLNLTSETEIEIKCMGQPVLPTLKLHNLVELWLDSAASASDRIPAIIGSSAKDFVMVLAYSQKAPHP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03937 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Trre13g03937 428 MobiDBLite consensus disorder prediction 228 280 - -
Trre13g03937 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Trre13g03937 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Trre13g03937 428 MobiDBLite consensus disorder prediction 251 271 - -
Trre13g03937 428 MobiDBLite consensus disorder prediction 116 134 - -
Trre13g03937 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 117 IPR013083 -
Trre13g03937 428 SUPERFAMILY RING/U-box 15 64 - -
Trre13g03937 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 424 IPR044807 GO:0004842
Trre13g03937 428 SMART ring_2 19 59 IPR001841 -
Trre13g03937 428 MobiDBLite consensus disorder prediction 113 202 - -
Trre13g03937 428 CDD RING-HC_PCGF 17 60 - -
Trre13g03937 428 MobiDBLite consensus disorder prediction 169 199 - -
Trre13g03937 428 MobiDBLite consensus disorder prediction 228 250 - -
Trre13g03937 428 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03937 Trre-Chr13 47482687 47487617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03937 5 346 C3H Transcription Factor Family AT2G30580 47.839 1.07e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03937 K16277 - gmx:100815540 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03937 13 47482687 47487617 Trre13g03937 13 47482687 47487617 ECH