Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03935 ATGGCGGTTGCTTTTTCTGAAGTTGAGCTTAAAGTTCAAGCTATGAACAAAAAGAAAACTACTATTTCAAGAAGCTGGATTTTGCTAAACCGTGATGGAAGAGAAACAGTATTTGATGTGGATAAGTATGCTATTATGCGTCTTGTCGAAATTCACGCAAGAGATCTTCGAATCATGGATCCTCTTCTTTCATATCCTTCAACCATTCTTGGCAGAGAGAAAGTCATTGTTCTCAATCTAGAGCATATAAAAGCTATTATTACTGCTGAAGAAGTATTGGTTAGAGACCCAATGGATGATGATGTTGTGCCAGTTGTTGAAGAGCTAAGAAGAAGATTACCGGTTAAGGTAAGTGGTCAAGGACAAGGAGAAGAAGAATCATGTGCTCAAGATGGTGAAGAAAATGAATTTCCTTTTGAGTTTCGTGCTTTGGAAGTAATATTAGAGGGAGTTTGTAGTTTCCTTGATGCACGAACAAGAGAGTTAGAGACCGCTGCTTATCCTGCTTTGGATGAACTAACCTCTAAGATCAGCAGTCGTAATTTGGATAAAGTACGAAAATTAAAAAGTGCAATGACTAGGTTGACCAATCGTGTTCATAAGATAAGAGAGGAATTAGAAAACCTACTTGATGATGATGAAGACATGGCTGAACTTTACTTATCAAGAAAGTTAGCTGTTTCATCCTCTCCCTCAAGTAATAATTCTGATCATGGTCCCAATTGGCATCATAGTCCAAATCAAAGTTCAAAATTACACAAATCAAGCAGAGGAAGTGCAACAACACTTCAAGAGGAAAATGATGTTGAAGAGCTTGAAATGTTACTAGAGGCTTATTTCATACAGATTGATGGCACATTAAATAAATTAACCACGGTACGAGAATATATTGATGACACTGAAGATTACATCAATATACAGCTTGATAATCACAGAAATCAACTGATTCAGCTAGAGCTTTTCCTAAGTTCAGGGACCGTTTGTTTTTCCATATATTCATTGGTGGCTGCAATATTTGGTATGAACATTCCATATACATGGAATCATGGTCACGGATATGTATTTAAATGGGTGGTAATTCTAACGGGAATGGCTTGTGGATCATTCTTTTTATCCATAGTATCGTATGCTCGACGCAAAGGTCTTGTTGGGTCTTGA 1158 0.3713 MAVAFSEVELKVQAMNKKKTTISRSWILLNRDGRETVFDVDKYAIMRLVEIHARDLRIMDPLLSYPSTILGREKVIVLNLEHIKAIITAEEVLVRDPMDDDVVPVVEELRRRLPVKVSGQGQGEEESCAQDGEENEFPFEFRALEVILEGVCSFLDARTRELETAAYPALDELTSKISSRNLDKVRKLKSAMTRLTNRVHKIREELENLLDDDEDMAELYLSRKLAVSSSPSSNNSDHGPNWHHSPNQSSKLHKSSRGSATTLQEENDVEELEMLLEAYFIQIDGTLNKLTTVREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCFSIYSLVAAIFGMNIPYTWNHGHGYVFKWVVILTGMACGSFFLSIVSYARRKGLVGS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03935 385 Pfam CorA-like Mg2+ transporter protein 270 368 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre13g03935 385 Coils Coil 185 223 - -
Trre13g03935 385 Gene3D - 9 97 - -
Trre13g03935 385 Gene3D Magnesium transport protein CorA, transmembrane region 104 315 - -
Trre13g03935 385 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 321 370 IPR045863 -
Trre13g03935 385 CDD Mrs2_Mfm1p-like 26 382 IPR039204 -
Trre13g03935 385 FunFam Magnesium transporter MRS2-5 115 315 - -
Trre13g03935 385 MobiDBLite consensus disorder prediction 229 264 - -
Trre13g03935 385 FunFam Magnesium transporter MRS2-1 14 97 - -
Trre13g03935 385 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 14 383 IPR039204 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03935 Trre-Chr13 47470716 47473796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03935 18 358 MRS2 Gene Family AT5G64560 72.080 2.38e-160 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03935 K16075 - gmx:100799368 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03935 13 47470716 47473796 Trre13g03935 13 47470716 47473796 ECH