Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03923 ATGGAAGTTATTGTTGGCATGAAGAAGGAGAAAATGGGATTTGAGGAAACTGAGCTAAGACTTGGAATTGGATCAACAAAAAAAGCTAGTGAAGAAGTTGTAAGGAAGAGAGGATTTTGTGAGACTGAAAGTGATGATGATGATGATGAGAACACTACTATGGATTTGATGCTTAATCTTTCATCTAAGGAAGCTAGTGGTGAGGTAGATCCAAGTGATAAGATCAAGACTTTGCAAAAGGAGAAAACTCTTTTGCCTGATCCTGCCAAGCCTCCTAAAAAAACGCAGGTTGTGGGTTGGCCACCTGTCCGGTCGTACCGGAAGAACATGTTAGCAATGCAAAAGAGTACTAATAATGTTGGAGATCATGAAAGTGAGAAGAACAATGCAATTAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTCCGCAAAGTCGACTTAAAAATGTACAAAAGTTACTCACAACTTTCTGATTCCTTAGGCAAAATGTTCAGCTCCTTCGCCATTGGCAACTGTGAATCACAAGGAATGAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTCTTAAACAATTCTGATTATGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGACGTCCCATGGGAGATGTTTGTTGGATCATGCAAACGTTTGCGTATCATGAAAGGAAAGGAGGCTATTGGCATTGCACCAAGAGCCATGGAGAAGTGCAAGAACAGAAGCTAG 750 0.4093 MEVIVGMKKEKMGFEETELRLGIGSTKKASEEVVRKRGFCETESDDDDDENTTMDLMLNLSSKEASGEVDPSDKIKTLQKEKTLLPDPAKPPKKTQVVGWPPVRSYRKNMLAMQKSTNNVGDHESEKNNAISFVKVSMDGAPYLRKVDLKMYKSYSQLSDSLGKMFSSFAIGNCESQGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGKEAIGIAPRAMEKCKNRS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03923 249 Gene3D - 125 242 - -
Trre13g03923 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 235 IPR003311 GO:0005634|GO:0006355
Trre13g03923 249 Pfam AUX/IAA family 16 240 IPR033389 -
Trre13g03923 249 FunFam Auxin-responsive protein 126 241 - -
Trre13g03923 249 SUPERFAMILY CAD & PB1 domains 130 230 - -
Trre13g03923 249 ProSiteProfiles PB1 domain profile. 131 231 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03923 Trre-Chr13 47366610 47371329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03923 124 234 B3 DNA Binding Superfamily AT3G61830 31.532 6.29e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre13g03923 AUX_IAA 8.9e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03923 K14484 - gmx:100810013 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03923 13 47366610 47371329 Trre13g03923 13 47366610 47371329 ECH