Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g03922 | ATGGGAAGCTATATTGAAACAGAGTTGATTATTAATCACAAGGACACAGAATTAAGGTTAGGATTACCTGGAAGTGAAGATGAACAACAATCATGTAATGGTTCTATTGTTAGAAGCAACAAGAGATCTTTTTCATCAGAAACAACATGTGTGGAACAAGAATCAATTTGTAAGAGCAACAATGTTAGCTCAGATACTTCTAATTCTTCAACCACAAGTAATGATCATGATCATGACCAAGACACCGTCCAACCTAAAAAGGTACAAGTAGTAGGGTGGCCACCAATTAGATCATTTAGGAAAAACAATTTACAACAAAAGAAAGTGGAAGATGGATGTGGAATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTGAGGAAGATAGATCTCAAAGTATACAAAAGCTATTCAGAACTTCTTATAGCTTTGGAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGATATAATGGATCTGAATGTGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGAACATGTTCATATCTTCTTGTAAGAGGCTAAAGATAGTGAAAGGATCAGAAGCAAAGGGGTTGGCATGTTTATGA | 633 | 0.3602 | MGSYIETELIINHKDTELRLGLPGSEDEQQSCNGSIVRSNKRSFSSETTCVEQESICKSNNVSSDTSNSSTTSNDHDHDQDTVQPKKVQVVGWPPIRSFRKNNLQQKKVEDGCGMYVKVSMAGAPYLRKIDLKVYKSYSELLIALENLFKCTFGEYSEREGYNGSECAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL | 210 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g03922 | 210 | Gene3D | - | 109 | 210 | - | - | |
Trre13g03922 | 210 | Pfam | AUX/IAA family | 16 | 208 | IPR033389 | - | |
Trre13g03922 | 210 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
Trre13g03922 | 210 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 12 | 205 | IPR003311 | GO:0005634|GO:0006355 | |
Trre13g03922 | 210 | FunFam | Auxin-responsive protein | 109 | 210 | - | - | |
Trre13g03922 | 210 | ProSiteProfiles | PB1 domain profile. | 114 | 206 | IPR000270 | GO:0005515 | |
Trre13g03922 | 210 | SUPERFAMILY | CAD & PB1 domains | 109 | 198 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g03922 | Trre-Chr13 | 47347849 | 47348943 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g03922 | 102 | 207 | B3 DNA Binding Superfamily | AT2G46530 | 34.906 | 1.61e-12 | 63.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX or IAA | Trre13g03922 | AUX_IAA | 7.7e-58 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g03922 | K14484 | - | gmx:100792134 | 280.026 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre13g03922 | 13 | 47347849 | 47348943 | Trre13g03922 | 13 | 47347849 | 47348943 | ECH |