Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03922 ATGGGAAGCTATATTGAAACAGAGTTGATTATTAATCACAAGGACACAGAATTAAGGTTAGGATTACCTGGAAGTGAAGATGAACAACAATCATGTAATGGTTCTATTGTTAGAAGCAACAAGAGATCTTTTTCATCAGAAACAACATGTGTGGAACAAGAATCAATTTGTAAGAGCAACAATGTTAGCTCAGATACTTCTAATTCTTCAACCACAAGTAATGATCATGATCATGACCAAGACACCGTCCAACCTAAAAAGGTACAAGTAGTAGGGTGGCCACCAATTAGATCATTTAGGAAAAACAATTTACAACAAAAGAAAGTGGAAGATGGATGTGGAATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTGAGGAAGATAGATCTCAAAGTATACAAAAGCTATTCAGAACTTCTTATAGCTTTGGAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGATATAATGGATCTGAATGTGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGAACATGTTCATATCTTCTTGTAAGAGGCTAAAGATAGTGAAAGGATCAGAAGCAAAGGGGTTGGCATGTTTATGA 633 0.3602 MGSYIETELIINHKDTELRLGLPGSEDEQQSCNGSIVRSNKRSFSSETTCVEQESICKSNNVSSDTSNSSTTSNDHDHDQDTVQPKKVQVVGWPPIRSFRKNNLQQKKVEDGCGMYVKVSMAGAPYLRKIDLKVYKSYSELLIALENLFKCTFGEYSEREGYNGSECAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03922 210 Gene3D - 109 210 - -
Trre13g03922 210 Pfam AUX/IAA family 16 208 IPR033389 -
Trre13g03922 210 MobiDBLite consensus disorder prediction 60 84 - -
Trre13g03922 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 205 IPR003311 GO:0005634|GO:0006355
Trre13g03922 210 FunFam Auxin-responsive protein 109 210 - -
Trre13g03922 210 ProSiteProfiles PB1 domain profile. 114 206 IPR000270 GO:0005515
Trre13g03922 210 SUPERFAMILY CAD & PB1 domains 109 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03922 Trre-Chr13 47347849 47348943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03922 102 207 B3 DNA Binding Superfamily AT2G46530 34.906 1.61e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre13g03922 AUX_IAA 7.7e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03922 K14484 - gmx:100792134 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03922 13 47347849 47348943 Trre13g03922 13 47347849 47348943 ECH