Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03921 ATGGCCAATAACAACCCTTCCGACGCTCCCGCCGCCGATGACTTCCTCGAACAAATCCTCAGTCTTCAGACCTTCGCTTCCGCCGATTCTGGATTAACCGGACCCGACGTTGGCCTTACTGGAACTTCTCCGATGATGCTTCAGCTTAACTCCTCCGACGCCAACCATCACCTCGATGCCGGAGGTTCCTTTCATGCGCCGGTGTATCACCAGTTAGGCTTGAGCTTGAACCAAGGTAAAGGAGGGTTCTTGAAGCCTGAGGAAGCTTCTGGTAGTGGTGAACGCTTTCGCAACGACGTCGTTCATGGTAGACCTAATAATGTTTTTCATGGGCAACCCATGCATACTAATGTTCCTGCTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACTGATCCACACAGCATAGCTGAGAGATTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGCTGCAAGATTTGGTTCCAAGTGTTAACAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTCGATTGGGCGGAGCAGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGGAAGAAGGCAGTGAAGGTGGAAGAAACCGACCGGCTTGGGACAAGTGGTCGAATGATGGCACAGAAAAACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGAGCTGCCATGCAACTGCTTCAATCGAAGGCGCTTTGCATCATGCCAATCTCCCTGGCATCGGCGATATACCAGTCACAGCCACCAGACAGCTCTAGTATAGTCAAGCCTGAAACCAATCCTCCCTCATAG 882 0.5034 MANNNPSDAPAADDFLEQILSLQTFASADSGLTGPDVGLTGTSPMMLQLNSSDANHHLDAGGSFHAPVYHQLGLSLNQGKGGFLKPEEASGSGERFRNDVVHGRPNNVFHGQPMHTNVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNRPAWDKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03921 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983
Trre13g03921 293 FunFam Basic helix-loop-helix transcription factor 132 194 - -
Trre13g03921 293 Gene3D - 132 194 IPR036638 GO:0046983
Trre13g03921 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Trre13g03921 293 MobiDBLite consensus disorder prediction 114 141 - -
Trre13g03921 293 Pfam Helix-loop-helix DNA-binding domain 142 186 IPR011598 GO:0046983
Trre13g03921 293 SMART finulus 143 192 IPR011598 GO:0046983
Trre13g03921 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03921 Trre-Chr13 47338938 47342320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03921 64 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.390 2.34e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g03921 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03921 - - gmx:100797789 454.521