Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03906 ATGGAATCGCACGGCGGAGGACCACTCCGTTCACGGAGTTCACAATCCGCTTCTCCTTCTCACTCCGCCTCTGCCTCCGCCACCTCTTCCATCCACAAACGCAAACTCGTTTCTGAAGATCACGCGCCTCCATTCCCTCCTTCTTCCTTATCCGCTGACACTCGCGACGGCGCACTCACATCCAACGACGACCTCGAAAGCATCTCCGCCCGCGGCAATGACTCTGATTCCGACGACGATTCCGAGGATGCAGTAGTTGATGACGACGAAGATGAGTACGACAATGATAACGGTTCCTCGATGCGTAATTTCACTGCTTCTAGGCTCAATAATGCTCCTTCCGCTCCTCGTAACAGTAAGCTCAAAACTGAAAACTCTACTGTTAAGATCGAACAATCTGATGTTGCCAAAGATGCCGGACCTACCGTTACCGGTTCTGCTGCTGGTGGCGGTTCCGTCCCCGGCATTGTAGTTAAGGAGGACGCTACGAAGATATTCACTGAAAATTTGCAGACTAGTGGTGCTTACAGTGCTAGGGAAGAGAGTCTAAAGAAAGAGGAAGAAACTGGAAAGCTCAAATTTGCATGCTTGTCGAATGATGGTGTTGACGAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTATATTGTTCGACTTGTTATGGATAGGAGCCACAAGTCTGTAATGGTTATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGCCCATATGCAAGCCAGAGGTTCGGTGAGATAGCCTTTTGTGCAATTACGGCTGATGAACAAGTAAAAGGATATGGTACCAGATTGATGAATCACTTAAAACAGTATGCTCGTGATGTAGATGGGCTGACCCATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACTAAAGAGATTCATTTGGAGAAAGATCGGTGGCAAGGTTATATAAAGGATTATGATGGGGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTTCCTTACACTGATTTATCAACTATGATCCGTCGTCAAAGACAGGCAATAGATGAAAAGATTAGAGAACTGTCAAACTGTCACATTGTTTATACTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAGAAAATTATTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCGCGGTTCAGAACTTTAGGTGGTTCTACTGACAATGCTACAAACCTGAAACATTTAACCCAGCTTATGCGTTCACTTCTAAAGTCAATGCTTGATCACGCTGATGCTTGGCCATTCAAGGAACCTGTTGATGCACGGGATGTTCCTGATTATTATGAAATCATCAAAGATCCAATGGATCTGAAGACAATGAGCAAGAGGGTAGAATCAGAACAATATTATGTCACATTTGAGATGTTTGTTGAGGATGTCAAAAGAATGTTTTCGAATGCACGTACCTATAATTCTCCAGAAACCATATATTACAAATGTGCTACAAGACTAGAAGCCCACTTTCAAAGCAAAGTGACATCGTTCCTTCAGTCTGGCGCCAAAGTTCAGTAG 1626 0.4379 MESHGGGPLRSRSSQSASPSHSASASATSSIHKRKLVSEDHAPPFPPSSLSADTRDGALTSNDDLESISARGNDSDSDDDSEDAVVDDDEDEYDNDNGSSMRNFTASRLNNAPSAPRNSKLKTENSTVKIEQSDVAKDAGPTVTGSAAGGGSVPGIVVKEDATKIFTENLQTSGAYSAREESLKKEEETGKLKFACLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYTGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRTLGGSTDNATNLKHLTQLMRSLLKSMLDHADAWPFKEPVDARDVPDYYEIIKDPMDLKTMSKRVESEQYYVTFEMFVEDVKRMFSNARTYNSPETIYYKCATRLEAHFQSKVTSFLQSGAKVQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03906 541 MobiDBLite consensus disorder prediction 98 132 - -
Trre13g03906 541 Pfam Acetyltransferase (GNAT) family 239 317 IPR000182 GO:0016747
Trre13g03906 541 Gene3D - 188 352 - -
Trre13g03906 541 FunFam Histone acetyltransferase KAT2A 189 353 - -
Trre13g03906 541 CDD Bromo_gcn5_like 433 530 - -
Trre13g03906 541 MobiDBLite consensus disorder prediction 53 68 - -
Trre13g03906 541 ProSitePatterns Bromodomain signature. 450 508 IPR018359 -
Trre13g03906 541 SMART bromo_6 426 535 IPR001487 GO:0005515
Trre13g03906 541 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 204 351 IPR016181 -
Trre13g03906 541 CDD NAT_SF 239 293 - -
Trre13g03906 541 PANTHER GH11602P 82 536 IPR037800 GO:0004402
Trre13g03906 541 MobiDBLite consensus disorder prediction 8 32 - -
Trre13g03906 541 Pfam Bromodomain 438 520 IPR001487 GO:0005515
Trre13g03906 541 Gene3D - 423 540 IPR036427 GO:0005515
Trre13g03906 541 PRINTS Bromodomain signature 448 461 IPR001487 GO:0005515
Trre13g03906 541 PRINTS Bromodomain signature 497 516 IPR001487 GO:0005515
Trre13g03906 541 PRINTS Bromodomain signature 478 496 IPR001487 GO:0005515
Trre13g03906 541 PRINTS Bromodomain signature 462 478 IPR001487 GO:0005515
Trre13g03906 541 SUPERFAMILY Bromodomain 416 534 IPR036427 GO:0005515
Trre13g03906 541 ProSiteProfiles Bromodomain profile. 445 516 IPR001487 GO:0005515
Trre13g03906 541 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 199 346 IPR000182 GO:0016747
Trre13g03906 541 MobiDBLite consensus disorder prediction 1 153 - -
Trre13g03906 541 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03906 Trre-Chr13 47252312 47265075 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre13g03906 Bromodomain 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03906 K06062 - gmx:100813942 935.636